9JO6 | pdb_00009jo6

The complex of alpha-synuclein in the presence of PD6

PDB DOI: https://doi.org/10.2210/pdb9JO6/pdb
BMRB: 36696

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-09-24 Released: 2025-08-06
Deposition Author(s): Blasco, P., Li, X.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 194
Conformers Submitted: 16
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 9JO6

This is version 1.0 of the entry. See complete history.

Literature

Development of Nanomolar Affinity Miniprotein Inhibitors Targeting alpha-Synuclein Aggregation as Promising Therapeutic Agents for Parkinson's Disease

Zhou, H., Liang, Z., Wang, C., Blasco, P., Ngai, W.L., Xiao, Y., Chong, T.H., Liu, H., Zheng, C., Chan, M.K., Li, X.

(2025) CC Chem

DOI: https://doi.org/10.31635/ccschem.025.202505587

Macromolecule Content

Total Structure Weight: 19.47 kDa
Atom Count: 1,359
Modeled Residue Count: 181
Deposited Residue Count: 181
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-synuclein	A	140	Homo sapiens	Mutation(s): 0 Gene Names: SNCA, NACP, PARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens) Explore P37840 Go to UniProtKB: P37840
PHAROS: P37840 GTEx: ENSG00000145335
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P37840
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
PD6	B	41	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for B8ZZJ0 (Homo sapiens) Explore B8ZZJ0 Go to UniProtKB: B8ZZJ0
GTEx: ENSG00000116030
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B8ZZJ0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 194
Conformers Submitted: 16
Selection Criteria: target function

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-08-06

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government		--

Revision History (Full details and data files)

Version 1.0: 2025-08-06
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.