9J5G | pdb_00009j5g

Autophagy-related proteins of Magnaporthe oryzae-MoAtg8

PDB DOI: https://doi.org/10.2210/pdb9J5G/pdb

Classification: APOPTOSIS
Organism(s): Pyricularia oryzae
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2024-08-12 Released: 2024-09-04
Deposition Author(s): Yan, J.Y., Zhu, X.M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.251 (Depositor), 0.253 (DCC)
R-Value Work:
0.205 (Depositor)
R-Value Observed:
0.207 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Structure of Atg8 at 2.9 Angstroms resolution

Yan, J.Y., Zhu, X.M.

To be published.

Macromolecule Content

Total Structure Weight: 14.42 kDa
Atom Count: 934
Modeled Residue Count: 112
Deposited Residue Count: 123
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Autophagy-related protein	A	123	Pyricularia oryzae	Mutation(s): 0 Gene Names: PoMZ_10995
UniProt
Find proteins for D4NXH5 (Pyricularia oryzae) Explore D4NXH5 Go to UniProtKB: D4NXH5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D4NXH5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.251 (Depositor), 0.253 (DCC)
R-Value Work: 0.205 (Depositor)
R-Value Observed: 0.207 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.597	α = 90
b = 52.424	β = 114.47
c = 36.443	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-09-04

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-09-04
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.