9J5G | pdb_00009j5g

Autophagy-related proteins of Magnaporthe oryzae-MoAtg8

• PDB DOI: https://doi.org/10.2210/pdb9J5G/pdb

• Classification: APOPTOSIS
• Organism(s): Pyricularia oryzae
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2024-08-12 Released: 2024-09-04 
• Deposition Author(s): Yan, J.Y., Zhu, X.M.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.251 (Depositor), 0.247 (DCC) 
• R-Value Work: 
  0.205 (Depositor), 0.204 (DCC) 
• R-Value Observed: 
  0.207 (Depositor) 

Starting Model: in silico

Literature

Structure of Atg8 at 2.9 Angstroms resolution

Yan, J.Y., Zhu, X.M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 14.42 kDa 
• Atom Count: 934 
• Modeled Residue Count: 112 
• Deposited Residue Count: 123 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Autophagy-related protein	A	123	Pyricularia oryzae	Mutation(s): 0  Gene Names: PoMZ_10995
UniProt
Find proteins for D4NXH5 (Pyricularia oryzae) Explore D4NXH5  Go to UniProtKB:  D4NXH5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.251 (Depositor), 0.247 (DCC) 
• R-Value Work:  0.205 (Depositor), 0.204 (DCC) 
• R-Value Observed: 0.207 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.597	α = 90
b = 52.424	β = 114.47
c = 36.443	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-04 
Deposition Author(s): Yan, J.Y., Zhu, X.M.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-09-04
  Type: Initial release