9IMA | pdb_00009ima

Cryo-EM structure for the GPRC5D complexed with Talquetamab Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.65 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9IMA

This is version 1.1 of the entry. See complete history

Literature

Structural Basis for the Recognition of GPRC5D by Talquetamab, a Bispecific Antibody for Multiple Myeloma.

Jeong, J.Park, J.Young Mo, G.Shin, J.Cho, Y.

(2024) J Mol Biology 436: 168748-168748

  • DOI: https://doi.org/10.1016/j.jmb.2024.168748
  • Primary Citation Related Structures: 
    9IMA

  • PubMed Abstract: 

    Multiple myeloma (MM) is a complex hematological malignancy characterized by abnormal antibody production from plasma cells. Despite advances in the treatment, many patients experience disease relapse or become refractory to treatment. G-protein-coupled receptor class C group 5 member D (GPRC5D), an orphan GPCR predominantly expressed in MM cells, is emerging as a promising target for MM immunotherapy. Talquetamab, a Food and Drug Administration-approved T-cell-directing bispecific antibody developed for treatment of MM, targets GPRC5D. Here, we elucidate the structure of GPRC5D complexed with the Fab fragment of talquetamab, using cryo-electron microscopy, providing the basis for recognition of GPRC5D by the bispecific antibody. GPRC5D forms a symmetric homodimer with the interface between transmembrane helix (TM) 4 of one protomer and TM4/5 of the other protomer. A single talquetamab Fab interacts with the GPRC5D dimer with its orientation toward the dimer interface. All six complementarity-determining regions of talquetamab engage with extracellular loops and TM3/5/7. In particular, the side-chain of an arginine residue from the antibody penetrates into a shallow pocket on the extracellular surface of GPRC5D. The structure offers insights for optimizing antibody design against GPRC5D for relapsed or refractory MM therapy.


  • Organizational Affiliation
    • Department of Life Sciences, Pohang University of Science and Technology, Pohang, Kyungbook 37673, South Korea.

Macromolecule Content 

  • Total Structure Weight: 130.2 kDa 
  • Atom Count: 7,472 
  • Modeled Residue Count: 933 
  • Deposited Residue Count: 1,151 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Talquetamab Fab (anti-GPRC5D) Heavy chainA [auth C]233Mus musculusMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Talquetamab Fab (anti-GPRC5D) Light chainB [auth D]214Mus musculusMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
G-protein coupled receptor family C group 5 member DC [auth B],
D [auth A]
352Homo sapiensMutation(s): 0 
Gene Names: GPRC5D
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZD1 (Homo sapiens)
Explore Q9NZD1 
Go to UniProtKB:  Q9NZD1
PHAROS:  Q9NZD1
GTEx:  ENSG00000111291 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NZD1
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.65 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.1_5286:

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2021R1A2C301335711

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-11
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection, Structure summary