9IMA | pdb_00009ima

Cryo-EM structure for the GPRC5D complexed with Talquetamab Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.65 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural Basis for the Recognition of GPRC5D by Talquetamab, a Bispecific Antibody for Multiple Myeloma.

Jeong, J.Park, J.Young Mo, G.Shin, J.Cho, Y.

(2024) J Mol Biology 436: 168748-168748

  • DOI: https://doi.org/10.1016/j.jmb.2024.168748
  • Primary Citation of Related Structures:  
    9IMA

  • PubMed Abstract: 

    Multiple myeloma (MM) is a complex hematological malignancy characterized by abnormal antibody production from plasma cells. Despite advances in the treatment, many patients experience disease relapse or become refractory to treatment. G-protein-coupled receptor class C group 5 member D (GPRC5D), an orphan GPCR predominantly expressed in MM cells, is emerging as a promising target for MM immunotherapy. Talquetamab, a Food and Drug Administration-approved T-cell-directing bispecific antibody developed for treatment of MM, targets GPRC5D. Here, we elucidate the structure of GPRC5D complexed with the Fab fragment of talquetamab, using cryo-electron microscopy, providing the basis for recognition of GPRC5D by the bispecific antibody. GPRC5D forms a symmetric homodimer with the interface between transmembrane helix (TM) 4 of one protomer and TM4/5 of the other protomer. A single talquetamab Fab interacts with the GPRC5D dimer with its orientation toward the dimer interface. All six complementarity-determining regions of talquetamab engage with extracellular loops and TM3/5/7. In particular, the side-chain of an arginine residue from the antibody penetrates into a shallow pocket on the extracellular surface of GPRC5D. The structure offers insights for optimizing antibody design against GPRC5D for relapsed or refractory MM therapy.


  • Organizational Affiliation
    • Department of Life Sciences, Pohang University of Science and Technology, Pohang, Kyungbook 37673, South Korea.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Talquetamab Fab (anti-GPRC5D) Heavy chainA [auth C]233Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Talquetamab Fab (anti-GPRC5D) Light chainB [auth D]214Mus musculusMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
G-protein coupled receptor family C group 5 member DC [auth B],
D [auth A]
352Homo sapiensMutation(s): 0 
Gene Names: GPRC5D
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZD1 (Homo sapiens)
Explore Q9NZD1 
Go to UniProtKB:  Q9NZD1
PHAROS:  Q9NZD1
GTEx:  ENSG00000111291 
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UniProt GroupQ9NZD1
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.65 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.1_5286:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2021R1A2C301335711

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-11
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection, Structure summary