9HGS | pdb_00009hgs

In vitro grown G14R Alpha-Synuclein Fibrils


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9HGS

This is version 1.3 of the entry. See complete history

Literature

A Novel alpha-Synuclein K58N Missense Variant in a Patient with Parkinson's Disease.

Al-Azzani, M.Weber, S.Ramalingam, N.Ramon, M.Shvachiy, L.Mestre, G.Zech, M.Sicking, K.de Opakua, A.I.Jayanthi, V.Amaral, L.Agarwal, A.Chandran, A.Chaves, S.R.Winkelmann, J.Trenkwalder, C.Schwager, M.Pauli, S.Dettmer, U.Fernandez, C.O.Lautenschlager, J.Zweckstetter, M.Fernandez-Busnadiego, R.Mollenhauer, B.Outeiro, T.F.

(2025) Mov Disord 40: 2732-2745

  • DOI: https://doi.org/10.1002/mds.70030
  • Primary Citation Related Structures: 
    9HGS, 9HXA

  • PubMed Abstract: 

    Parkinson's disease (PD) is a complex multifactorial disorder with a genetic component in about 15% of cases. Multiplications and point mutations in SNCA gene, encoding α-synuclein (aSyn), are linked to rare familial forms of PD. Our goal was to assess the clinical presentation and the biological effects of a novel K58N aSyn mutation identified in a patient with PD. We describe the clinical presentation associated with the novel mutation, together with genetic testing through whole exome sequencing (WES). Furthermore, we conducted extensive biophysical and cellular assays to assess the functional consequences of this novel variant. The patient exhibited typical features of sporadic PD with early onset and a benign disease course. WES showed a novel heterozygous missense variant in SNCA (NM_000345.4, c.174G>C; p.K58N). A positive family history of PD was evident, because both a parent and a grandparent had been diagnosed with PD but were deceased. The patient underwent deep brain stimulation surgery 13 years postdiagnosis, showing stable, long-term improvements in motor symptoms. Biophysical studies demonstrated K58N substitution causes local structural effects, disrupts membrane binding, and enhances aSyn in vitro aggregation. In cellular systems, K58N aSyn produces fewer inclusions per cell and does not form condensates. The variant increases aSyn cytoplasmic distribution and displays aberrant activity-dependent dynamic serine-129 phosphorylation. The clinical presentation associated with the novel K58N aSyn mutation suggests a relatively benign PD course consistent with the phenotypic spectrum of idiopathic PD. Overall, our molecular studies provide novel insight into the biology and pathobiology of aSyn. © 2025 The Author(s). Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.


  • Organizational Affiliation
    • University Medical Center Göttingen, Department of Experimental Neurodegeneration, Center for Biostructural Imaging of Neurodegeneration, Göttingen, Germany.

Macromolecule Content 

  • Total Structure Weight: 14.58 kDa 
  • Atom Count: 526 
  • Modeled Residue Count: 75 
  • Deposited Residue Count: 140 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Alpha-synucleinA [auth C]140Homo sapiensMutation(s): 1 
Gene Names: SNCANACPPARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens)
Explore P37840 
Go to UniProtKB:  P37840
GTEx:  ENSG00000145335 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP37840
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyEXC 2067/1-390729940
German Research Foundation (DFG)GermanySFB1286 (B8)
German Research Foundation (DFG)GermanySFB1286 (A12)
German Research Foundation (DFG)Germany448415290
Michael J. Fox FoundationUnited StatesASAP-000282

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-29
    Type: Initial release
  • Version 1.1: 2025-03-12
    Changes: Data collection, Database references
  • Version 1.2: 2025-07-02
    Changes: Data collection
  • Version 1.3: 2026-07-29
    Changes: Data collection, Database references