9HGS | pdb_00009hgs

In vitro grown G14R Alpha-Synuclein Fibrils


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9HGS

This is version 1.2 of the entry. See complete history

Literature

A novel alpha-synuclein K58N missense variant in a patient with Parkinson's disease.

Al-Azzani, M.Weber, S.Ramalingam, N.Ramon, M.Shvachiy, L.Mestre, G.Zech, M.Sicking, K.Ibanez de Opakua, A.Jayanthi, V.Amaral, L.Agarwal, A.Chandran, A.Chaves, S.R.Winkelmann, J.Trenkwalder, C.Schwager, M.Pauli, S.Dettmer, U.Fernandez, C.O.Lautenschlager, J.Zweckstetter, M.Busnadiego, R.F.Mollenhauer, B.Outeiro, T.F.

(2025) Medrxiv 

  • DOI: https://doi.org/10.1101/2025.02.07.25321793
  • Primary Citation Related Structures: 
    9HGS, 9HXA

  • PubMed Abstract: 

    Mutations and multiplications in the SNCA gene , encoding alpha-synuclein (aSyn), are associated with familial forms of Parkinson's disease (PD). We report the identification of a novel SNCA missense mutation (NM_000345.4, cDNA 174G>C; protein K58N) in a PD patient using whole exome sequencing, and describe comprehensive molecular and cellular analysss of the effects of this novel mutation. The patient exhibited typical sporadic PD with early onset and a benign disease course. Biophysical studies revealed that the K58N substitution causes local structural effects, disrupts binding to membranes, and enhances aSyn in vitro aggregation. K58N aSyn produces fewer inclusions per cell, and fails to undergo condensate formation. The mutation increases the cytoplasmic distribution of the protein, and has minimal effect on the dynamic reversibility of serine-129 phosphorylation. In total, the identification of this novel mutation advances our understanding of aSyn biology and pathobiology.


  • Organizational Affiliation
    • University Medical Center Göttingen, Department of Experimental Neurodegeneration, Center for Biostructural Imaging of Neurodegeneration, Göttingen, Germany.

Macromolecule Content 

  • Total Structure Weight: 14.58 kDa 
  • Atom Count: 526 
  • Modeled Residue Count: 75 
  • Deposited Residue Count: 140 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Alpha-synucleinA [auth C]140Homo sapiensMutation(s): 1 
Gene Names: SNCANACPPARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens)
Explore P37840 
Go to UniProtKB:  P37840
PHAROS:  P37840
GTEx:  ENSG00000145335 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP37840
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyEXC 2067/1-390729940
German Research Foundation (DFG)GermanySFB1286 (B8)
German Research Foundation (DFG)GermanySFB1286 (A12)
German Research Foundation (DFG)Germany448415290
Michael J. Fox FoundationUnited StatesASAP-000282

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-29
    Type: Initial release
  • Version 1.1: 2025-03-12
    Changes: Data collection, Database references
  • Version 1.2: 2025-07-02
    Changes: Data collection