9HDG | pdb_00009hdg

The structure of the catalytic domain of AfAA11B from the filamentous fungus Aspergillus fumigatus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free: 
    0.196 (Depositor), 0.196 (DCC) 
  • R-Value Work: 
    0.165 (Depositor), 0.164 (DCC) 
  • R-Value Observed: 
    0.166 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Structure-Function Analysis of an Understudied Type of LPMO with Unique Redox Properties and Substrate Specificity.

Hall, K.R.Elisa Ronnekleiv, S.Gautieri, A.Lilleas, H.Skaali, R.Rieder, L.Nikoline Englund, A.Landsem, E.Emrich-Mills, T.Z.Ayuso-Fernandez, I.Kjendseth Rohr, A.Sorlie, M.Eijsink, V.G.H.

(2025) ACS Catal 15: 10601-10617

  • DOI: https://doi.org/10.1021/acscatal.5c03003
  • Primary Citation of Related Structures:  
    9HDG

  • PubMed Abstract: 

    Lytic polysaccharide monooxygenases (LPMOs) are important biotechnological tools due to their ability to activate C-H bonds in recalcitrant polysaccharides. To-date, most research has focused on LPMOs from the AA9 and AA10 families, while LPMOs from the AA11 family have not received the same attention since their classification almost a decade ago, despite their wide abundance in fungi. Previous studies have shown that Af AA11B from Aspergillus fumigatus has exceptionally high oxidase activity, low reduction potential and the ability to degrade soluble chitooligomers. To better understand the catalytic capabilities of Af AA11B, its crystal structure was solved, revealing a unique flexible surface loop that mediates activity on soluble substrates, as shown by molecular dynamics simulations and mutagenesis. Mutation of an active site Glu residue to a Gln, Asp or Asn showed that this residue is crucial in controlling the low reduction potential and high oxidase activity of Af AA11B. The impact of these mutations on copper reactivity aligned well with results obtained for an AA9 LPMO, which naturally has a Gln in this position. However, the impact of these mutations on the productive peroxygenase reaction, measured using an electrochemical hydrogen peroxide sensor, and on protective hole hopping mechanisms, measured using stopped-flow ultraviolet-visible (UV-vis) spectrophotometry, differed from the AA9 LPMO. This shows that the impact of this Glu/Gln residue is dependent on additional structural or dynamic differences between the LPMOs. Despite the presence of several tryptophan residues in the protein core, the hole hopping studies revealed formation of only a tyrosyl feature with a lifespan distinct from similar features detected in other LPMOs, further highlighting the unique properties of Af AA11B.


  • Organizational Affiliation
    • Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432 Ås, Norway.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
AA11 family lytic polysaccharide monooxygenase B219Aspergillus fumigatusMutation(s): 0 
Gene Names: AA11BAFUA_5G03010
EC: 1.14.99
UniProt
Find proteins for Q4WEH3 (Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293))
Explore Q4WEH3 
Go to UniProtKB:  Q4WEH3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4WEH3
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download Ideal Coordinates CCD File 
D [auth A]2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
ASC
Query on ASC

Download Ideal Coordinates CCD File 
C [auth A]ASCORBIC ACID
C6 H8 O6
CIWBSHSKHKDKBQ-JLAZNSOCSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
E [auth A]
F [auth A]
G [auth A]
H [auth A]
I [auth A]
E [auth A],
F [auth A],
G [auth A],
H [auth A],
I [auth A],
J [auth A]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
CU (Subject of Investigation/LOI)
Query on CU

Download Ideal Coordinates CCD File 
B [auth A]COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free:  0.196 (Depositor), 0.196 (DCC) 
  • R-Value Work:  0.165 (Depositor), 0.164 (DCC) 
  • R-Value Observed: 0.166 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.332α = 90
b = 53.655β = 90
c = 70.929γ = 90
Software Package:
Software NamePurpose
MxCuBEdata collection
XDSdata reduction
Aimlessdata scaling
PHENIXphasing
PHENIXrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union856446

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-09
    Type: Initial release