9H75 | pdb_00009h75

NMR solution structure of the GEFH1 C1 domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of microtubule-mediated signal transduction.

Choi, S.R.Blum, T.B.Giono, M.Roy, B.Vakonakis, I.Schmid, D.Oelgarth, N.Ranganathan, A.Gossert, A.D.Shivashankar, G.V.Zippelius, A.Steinmetz, M.O.

(2025) Cell 

  • DOI: https://doi.org/10.1016/j.cell.2025.11.011
  • Primary Citation of Related Structures:  
    9H1O, 9H75

  • PubMed Abstract: 

    Microtubules have long been recognized as upstream mediators of intracellular signaling, but the mechanisms underlying this fundamental function remain elusive. Here, we identify the structural basis by which microtubules regulate the guanine nucleotide exchange factor H1 (GEFH1), a key activator of the Ras homolog family member A (RhoA) pathway. We show that specific features of the microtubule lattice bind the C1 domain of GEFH1, leading to the sequestration and inactivation of this signaling protein. Targeted mutations in C1 residues disrupt this interaction, triggering GEFH1 release and activation of RhoA-dependent immune responses. Building on this sequestration-and-release mechanism, we identify microtubule-binding C1 domains in additional signaling proteins, including other guanine nucleotide exchange factors (GEFs), kinases, a GTPase-activating protein (GAP), and a tumor suppressor, and show that microtubule-mediated regulation via C1 domains is conserved in the Ras association domain-containing protein 1A (RASSF1A). Our findings establish a structural framework for understanding how microtubules can function as spatiotemporal signal sensors, integrating and processing diverse signaling pathways to control important cellular processes.


  • Organizational Affiliation
    • PSI Center for Life Sciences, 5232 Villigen PSI, Switzerland. Electronic address: sung-ryul.choi@psi.ch.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Rho guanine nucleotide exchange factor 275Homo sapiensMutation(s): 0 
Gene Names: ARHGEF2KIAA0651LFP40
UniProt & NIH Common Fund Data Resources
Find proteins for Q92974 (Homo sapiens)
Explore Q92974 
Go to UniProtKB:  Q92974
PHAROS:  Q92974
GTEx:  ENSG00000116584 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92974
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland31003A_166608

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-05
    Type: Initial release
  • Version 1.1: 2026-01-14
    Changes: Database references