9H4N | pdb_00009h4n

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.46 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Analysis of Rpl13 variant consequences on bone development using a mouse model of spondyloepimetaphyseal dysplasia (Isidor-Toutain type)

Orgebin, E., Astier, A., Rinaldi, D., Lamoureux, F., Georges, S., Brounais-Le Royer, B., Charrier, C., Amiaud, J., Battaglia, S., Kenis, V., Markova, T., Tsabai, P., Tuttle, A., Grand, K., Sanchez, P., Gleizes, P.E., Vincent, M., Isidor, B., Verrechia, F., Ory, B., Plisson-Chastang, C., Lezot, F., Baud'huin, M.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL30A [auth A1]222Mus musculusMutation(s): 0 
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UniProt GroupP14148
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL8B [auth B1]232Mus musculusMutation(s): 0 
UniProt
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL6C [auth C1]190Mus musculusMutation(s): 0 
UniProt
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UniProt GroupP51410
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL16-likeD [auth D1]213Mus musculusMutation(s): 0 
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL5E [auth E1]174Mus musculusMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL13F [auth F1]203Mus musculusMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14G [auth G1]139Mus musculusMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L15H [auth H1]203Mus musculusMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2L [auth D2]251Mus musculusMutation(s): 0 
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL3M [auth E2]402Mus musculusMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL4N [auth F2]359Mus musculusMutation(s): 0 
UniProt
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL18O [auth G2]293Mus musculusMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6P [auth H2]221Mus musculusMutation(s): 0 
UniProt
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL13Q [auth I2]201Mus musculusMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L17R [auth J2]153Mus musculusMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL18S [auth K2]186Mus musculusMutation(s): 0 
UniProt
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL19T [auth L2]164Mus musculusMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL20U [auth M2]175Mus musculusMutation(s): 0 
UniProt
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL21V [auth N2]159Mus musculusMutation(s): 0 
UniProt
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UniProt GroupO09167
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL22W [auth O2]101Mus musculusMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23X [auth P2]129Mus musculusMutation(s): 0 
UniProt
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL24Y [auth Q2]62Mus musculusMutation(s): 0 
UniProt
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23aZ [auth R2]118Mus musculusMutation(s): 0 
UniProt
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL24AA [auth S2]134Mus musculusMutation(s): 0 
UniProt
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UniProt GroupP61255
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL27BA [auth T2]135Mus musculusMutation(s): 0 
UniProt
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27aCA [auth U2]147Mus musculusMutation(s): 0 
UniProt
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL29DA [auth V2]117Mus musculusMutation(s): 0 
UniProt
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL30EA [auth W2]94Mus musculusMutation(s): 0 
UniProt
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL31FA [auth X2]107Mus musculusMutation(s): 0 
UniProt
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL32GA [auth Y2]128Mus musculusMutation(s): 0 
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IMPC:  MGI:98038
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35aHA [auth Z2]109Mus musculusMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L34IA [auth a2]114Mus musculusMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL29JA [auth b2]120Mus musculusMutation(s): 0 
UniProt
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL36KA [auth c2]102Mus musculusMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL37LA [auth d2]86Mus musculusMutation(s): 0 
UniProt
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38MA [auth e2]69Mus musculusMutation(s): 0 
UniProt
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL39NA [auth f2]50Mus musculusMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL40OA [auth g2]52Mus musculusMutation(s): 0 
UniProt
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS32PA [auth h2]24Mus musculusMutation(s): 0 
UniProt
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL42QA [auth i2]103Mus musculusMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL43RA [auth j2]89Mus musculusMutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL28SA [auth k2]125Mus musculusMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS1VA [auth p2]214Mus musculusMutation(s): 0 
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS3WA [auth q2]226Mus musculusMutation(s): 0 
EC: 4.2.99.18
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS4XA [auth r2]262Mus musculusMutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS17YA [auth w2]153Mus musculusMutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17ZA [auth z2]110Mus musculusMutation(s): 0 
UniProt
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS2AB [auth o2]214Mus musculusMutation(s): 0 
UniProt
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S5BB [auth s2]142Mus musculusMutation(s): 0 
UniProt
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S10CB [auth v2]58Mus musculusMutation(s): 0 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS19DB [auth x2]130Mus musculusMutation(s): 0 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS9EB [auth y2]144Mus musculusMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS13FB [auth A3]144Mus musculusMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS19GB [auth B3]141Mus musculusMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S20HB [auth C3]16Mus musculusMutation(s): 0 
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IMPC:  MGI:1914677
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS21IB [auth D3]83Mus musculusMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS12JB [auth E3]141Mus musculusMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28KB [auth G3]7Mus musculusMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS14LB [auth H3]54Mus musculusMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
Receptor of activated protein C kinase 1MB [auth I3]169Mus musculusMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS5NB [auth J3]222Mus musculusMutation(s): 0 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6OB [auth K3]187Mus musculusMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS4PB [auth L3]185Mus musculusMutation(s): 0 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS15QB [auth N3]150Mus musculusMutation(s): 0 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS8RB [auth P3]129Mus musculusMutation(s): 0 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS24SB [auth Q3]129Mus musculusMutation(s): 0 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS27-likeTB [auth S3]83Mus musculusMutation(s): 0 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30UB [auth T3]41Mus musculusMutation(s): 0 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS26WB [auth F3]97Mus musculusMutation(s): 0 
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IMPC:  MGI:1351628
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS11XB [auth O3]133Mus musculusMutation(s): 0 
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Entity ID: 9
MoleculeChains LengthOrganismImage
28S ribosomal RNAI [auth A2]3,609Mus musculus
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Entity ID: 10
MoleculeChains LengthOrganismImage
5S ribosomal RNAJ [auth B2]120Mus musculus
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Entity ID: 11
MoleculeChains LengthOrganismImage
5.8S ribosomal RNAK [auth C2]156Mus musculus
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Entity ID: 46
MoleculeChains LengthOrganismImage
18S ribosomal RNATA [auth m2]1,724Mus musculus
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Entity ID: 47
MoleculeChains LengthOrganismImage
Transfer RNAUA [auth n2]75Mus musculus
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Entity ID: 74
MoleculeChains LengthOrganismImage
Messenger RNAVB [auth Bx]10Mus musculus
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Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
Download Ideal Coordinates CCD File 
AC [auth i2]
BC [auth j2]
CC [auth H3]
EC [auth F3]
YB [auth d2]
AC [auth i2],
BC [auth j2],
CC [auth H3],
EC [auth F3],
YB [auth d2],
ZB [auth g2]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
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DC [auth H3]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.46 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Institut National du Cancer (inCA)France--

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-05
    Type: Initial release