9GYT | pdb_00009gyt

High resolution structure of B. oleracea mitoribosome

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.11 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structural insights into cauliflower mitoribosome in translation state and in association with a late assembly factor.

Skaltsogiannis, V., Wolff, P., Nguyen, T.T., Corre, N., Pflieger, D., Blevins, T., Hashem, Y., Giege, P., Waltz, F.

(2025) Nat Commun 16: 10839-10839

  • DOI: https://doi.org/10.1038/s41467-025-65864-z
  • Primary Citation of Related Structures:  
    9EVS, 9GYT

  • PubMed Abstract: 

    Ribosomes are key molecular machines that translate mRNA into proteins. Mitoribosomes are specific ribosomes found in mitochondria, which have been shown to be remarkably diverse across eukaryotic lineages. In plants, they possess unique features, including additional rRNA domains stabilized by plant-specific proteins. However, the structural specificities of plant mitoribosomes in translation state remained unknown. We used cryo-electron microscopy to provide a high-resolution structural characterization of the cauliflower mitoribosome, in translating and maturation states. The structure reveals the mitoribosome bound with a tRNA in the peptidyl site, along with a segment of mRNA and a nascent polypeptide. Moreover, using structural data, nanopore sequencing and mass spectrometry, we identify a set of 19 ribosomal RNA modifications. Additionally, we observe a late assembly intermediate of the small ribosomal subunit, in complex with the RsgA assembly factor. This reveals how a plant-specific extension of RsgA blocks the mRNA channel to prevent premature mRNA association before complete small subunit maturation. Our findings elucidate key aspects of translation in angiosperm plant mitochondria, revealing its distinct features compared to other eukaryotic lineages.

    • Organizational Affiliation: 
    • Institut de biologie de moléculaire des plantes CNRS, Université de Strasbourg, 12 rue du général Zimmer, Strasbourg, France.

Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S2B [auth A]212Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3CN01 (Brassica oleracea var. oleracea)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS3mC [auth B]554Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A068BCX1 (Brassica oleracea var. botrytis)
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
uS4mD [auth C]362Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
S5 DRBM domain-containing proteinE [auth D]501Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3AS28 (Brassica oleracea var. oleracea)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
bS6mF [auth E]138Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3CIR5 (Brassica oleracea var. oleracea)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
uS7m,Small ribosomal subunit protein uS7mG [auth F]157Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
uS8mH [auth G]129Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
uS9mI [auth H]383Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS10 domain-containing proteinJ [auth I]228Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
uS11mK [auth J]304Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
uS12mL [auth K]125Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
uS13mM [auth L]154Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
uS14mN [auth M]155Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS15cO [auth N]414Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16P [auth O]136Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
uS17mQ [auth P]110Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
bS18mR [auth Q]237Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS19mS [auth R]212Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for P39697 (Arabidopsis thaliana)
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S21T [auth S]100Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3AW14 (Brassica oleracea var. oleracea)
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S31, mitochondrialU [auth T]94Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3C0Z4 (Brassica oleracea var. oleracea)
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
mS23V [auth U]192Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
mS26W [auth V]193Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein mS29X [auth W]483Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3CAV8 (Brassica oleracea var. oleracea)
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
mS31/mS46Y [auth X]496Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
mS33Z [auth Y]102Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
mS34AA [auth Z]153Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
mS35BA [auth a]424Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
mS37CA [auth b]80Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
mS38DA [auth c]128Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
mS41EA [auth d]110Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
mS45FA [auth e]383Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
mS47GA [auth f]410Brassica oleracea var. botrytisMutation(s): 0 
EC: 3.1.2
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein mS81 (rPPR8)HA [auth g]668Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
mS83 (rPPR10)IA [auth h]384Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
PROP1-like PPR domain-containing proteinJA [auth i]725Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A654ECT9 (Arabidopsis thaliana)
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
mS76 (rPPR1)KA [auth j]408Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
mS86LA [auth k]153Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein mS80 (rPPR6)MA [auth l]576Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2 C-terminal domain-containing proteinNA [auth 1B]217Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
uL2m N-ter mitochondrialOA [auth 1C]286Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
uL3mPA [auth 1D]319Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
uL4mQA [auth 1E]296Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
uL5mRA [auth 1F]185Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL6 alpha-beta domain-containing proteinSA [auth 1G]102Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
bL9mTA [auth 1H]220Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
uL10mUA [auth 1I]170Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
uL11mVA [auth 1J]156Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13WA [auth 1K]204Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
uL14mXA [auth 1L]176Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
uL15mYA [auth 1M]281Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL16mZA [auth 1N]179Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17AB [auth 1O]160Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A8S9IRX0 (Brassica cretica)
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UniProt GroupA0A8S9IRX0
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L18e/L15P domain-containing proteinBB [auth 1P]114Brassica oleracea var. botrytisMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D3DCH7
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
bL19mCB [auth 1Q]233Brassica oleracea var. botrytisMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D3B0P2
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
bL20mDB [auth 1R]126Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
bL21mEB [auth 1S]270Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL22mFB [auth 1T]264Brassica oleracea var. botrytisMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D3BFS0
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
uL23mGB [auth 1U]180Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
uL24mHB [auth 1V]159Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
bL25-2mIB [auth 1W]248Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
bL25mJB [auth 1X]271Brassica oleracea var. botrytisMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D3BK40
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27KB [auth 1Y]156Brassica oleracea var. botrytisMutation(s): 0 
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UniProt GroupA0A0D3B184
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
bL28mLB [auth 1Z]215Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
uL29mMB [auth 1a]144Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
uL30mNB [auth 1b]109Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
bL31mOB [auth 1c]135Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
bL32mPB [auth 1d]139Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
bL33mQB [auth 1e]106Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL34mRB [auth 1f]146Brassica oleracea var. botrytisMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D3CKG1
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
bL35mSB [auth 1g]162Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal proteinTB [auth 1h]103Brassica oleracea var. botrytisMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8W464
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
mL40UB [auth 1i]247Brassica oleracea var. botrytisMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A3P6DV95
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
mL41VB [auth 1j]90Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein mL43WB [auth 1k]119Brassica oleracea var. botrytisMutation(s): 0 
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UniProt GroupA0A0D3DUE5
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
mL46XB [auth 1l]239Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
mL53YB [auth 1m]128Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
mL54ZB [auth 1o]125Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
mL59/mL64AC [auth 1p]130Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
mL60BC [auth 1q]78Brassica oleracea var. botrytisMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D3BIE3
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
mL80CC [auth 1r]167Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
mL87DC [auth 1s]181Brassica oleracea var. botrytisMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D3DDW7
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
mL101 (rPPR4)EC [auth 1t]491Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 84
MoleculeChains Sequence LengthOrganismDetailsImage
mL102 (rPPR5)FC [auth 1u]752Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
mL104 (rPPR9)GC [auth 1v]514Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 1
MoleculeChains LengthOrganismImage
5S rRNAA [auth 3]118Brassica oleracea var. botrytis
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Entity ID: 86
MoleculeChains LengthOrganismImage
26S rRNAHC [auth 1]2,922Brassica oleracea var. botrytis
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Entity ID: 87
MoleculeChains LengthOrganismImage
18S rRNAIC [auth 2]1,766Brassica oleracea var. botrytis
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Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP
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NC [auth W]ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
ZN
Query on ZN
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UC [auth 1d],
VC [auth 1h]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K
Query on K
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AE [auth 1]
AJ [auth 1]
AQ [auth 2]
AS [auth 2]
BE [auth 1]
AE [auth 1],
AJ [auth 1],
AQ [auth 2],
AS [auth 2],
BE [auth 1],
CD [auth 1],
CE [auth 1],
CL [auth 1],
DD [auth 1],
DS [auth 2],
ED [auth 1],
EE [auth 1],
EG [auth 1],
ES [auth 2],
FD [auth 1],
FG [auth 1],
FS [auth 2],
GE [auth 1],
GG [auth 1],
GJ [auth 1],
GK [auth 1],
GS [auth 2],
HF [auth 1],
HG [auth 1],
HL [auth 1],
HS [auth 2],
IG [auth 1],
IS [auth 2],
JG [auth 1],
JI [auth 1],
KE [auth 1],
KG [auth 1],
KI [auth 1],
KS [auth 2],
LG [auth 1],
MG [auth 1],
NF [auth 1],
OF [auth 1],
OG [auth 1],
OJ [auth 1],
PC [auth 1B],
PF [auth 1],
PG [auth 1],
PH [auth 1],
PS [auth 2],
QC [auth 1B],
QF [auth 1],
QK [auth 1],
QS [auth 2],
RF [auth 1],
RS [auth 2],
SE [auth 1],
SF [auth 1],
SH [auth 1],
SS [auth 2],
TC [auth 1E],
TF [auth 1],
TG [auth 1],
TH [auth 1],
TK [auth 1],
TS [auth 2],
UG [auth 1],
UK [auth 1],
US [auth 2],
VD [auth 1],
VG [auth 1],
VJ [auth 1],
VK [auth 1],
WG [auth 1],
WJ [auth 1],
WP [auth 2],
XE [auth 1],
XG [auth 1],
XJ [auth 1],
XP [auth 2],
YD [auth 1],
YG [auth 1],
YJ [auth 1],
ZD [auth 1],
ZF [auth 1],
ZG [auth 1],
ZI [auth 1],
ZP [auth 2],
ZR [auth 2]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
Query on MG
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AD [auth 1]
AF [auth 1]
AG [auth 1]
AH [auth 1]
AI [auth 1]
AD [auth 1],
AF [auth 1],
AG [auth 1],
AH [auth 1],
AI [auth 1],
AK [auth 1],
AL [auth 1],
AM [auth 1],
AN [auth 1],
AO [auth 1],
AP [auth 2],
AR [auth 2],
AT [auth 2],
BD [auth 1],
BF [auth 1],
BG [auth 1],
BH [auth 1],
BI [auth 1],
BJ [auth 1],
BK [auth 1],
BL [auth 1],
BM [auth 1],
BN [auth 1],
BO [auth 1],
BP [auth 2],
BQ [auth 2],
BR [auth 2],
BS [auth 2],
BT [auth 2],
CF [auth 1],
CG [auth 1],
CH [auth 1],
CI [auth 1],
CJ [auth 1],
CK [auth 1],
CM [auth 1],
CN [auth 1],
CO [auth 1],
CP [auth 2],
CQ [auth 2],
CR [auth 2],
CS [auth 2],
CT [auth 2],
DE [auth 1],
DF [auth 1],
DG [auth 1],
DH [auth 1],
DI [auth 1],
DJ [auth 1],
DK [auth 1],
DL [auth 1],
DM [auth 1],
DN [auth 1],
DO [auth 1],
DP [auth 2],
DQ [auth 2],
DR [auth 2],
EF [auth 1],
EH [auth 1],
EI [auth 1],
EJ [auth 1],
EK [auth 1],
EL [auth 1],
EM [auth 1],
EN [auth 1],
EO [auth 1],
EP [auth 2],
EQ [auth 2],
ER [auth 2],
FE [auth 1],
FF [auth 1],
FH [auth 1],
FI [auth 1],
FJ [auth 1],
FK [auth 1],
FL [auth 1],
FM [auth 1],
FN [auth 1],
FO [auth 1],
FP [auth 2],
FQ [auth 2],
FR [auth 2],
GD [auth 1],
GF [auth 1],
GH [auth 1],
GI [auth 1],
GL [auth 1],
GM [auth 1],
GN [auth 1],
GO [auth 1],
GP [auth 2],
GQ [auth 2],
GR [auth 2],
HD [auth 1],
HE [auth 1],
HH [auth 1],
HI [auth 1],
HJ [auth 1],
HK [auth 1],
HM [auth 1],
HN [auth 1],
HO [auth 1],
HP [auth 2],
HQ [auth 2],
HR [auth 2],
ID [auth 1],
IE [auth 1],
IF [auth 1],
IH [auth 1],
II [auth 1],
IJ [auth 1],
IK [auth 1],
IL [auth 1],
IM [auth 1],
IN [auth 1],
IO [auth 1],
IP [auth 2],
IQ [auth 2],
IR [auth 2],
JC [auth 3],
JD [auth 1],
JE [auth 1],
JF [auth 1],
JH [auth 1],
JJ [auth 1],
JK [auth 1],
JL [auth 1],
JM [auth 1],
JN [auth 1],
JO [auth 1],
JP [auth 2],
JQ [auth 2],
JR [auth 2],
JS [auth 2],
KC [auth 3],
KD [auth 1],
KF [auth 1],
KH [auth 1],
KJ [auth 1],
KK [auth 1],
KL [auth 1],
KM [auth 1],
KN [auth 1],
KO [auth 1],
KP [auth 2],
KQ [auth 2],
KR [auth 2],
LC [auth 3],
LD [auth 1],
LE [auth 1],
LF [auth 1],
LH [auth 1],
LI [auth 1],
LJ [auth 1],
LK [auth 1],
LL [auth 1],
LM [auth 1],
LN [auth 1],
LO [auth 1],
LP [auth 2],
LQ [auth 2],
LR [auth 2],
LS [auth 2],
MC [auth T],
MD [auth 1],
ME [auth 1],
MF [auth 1],
MH [auth 1],
MI [auth 1],
MJ [auth 1],
MK [auth 1],
ML [auth 1],
MM [auth 1],
MN [auth 1],
MO [auth 1],
MP [auth 2],
MQ [auth 2],
MR [auth 2],
MS [auth 2],
ND [auth 1],
NE [auth 1],
NG [auth 1],
NH [auth 1],
NI [auth 1],
NJ [auth 1],
NK [auth 1],
NL [auth 1],
NM [auth 1],
NN [auth 1],
NO [auth 1],
NP [auth 2],
NQ [auth 2],
NR [auth 2],
NS [auth 2],
OC [auth W],
OD [auth 1],
OE [auth 1],
OH [auth 1],
OI [auth 1],
OK [auth 1],
OL [auth 1],
OM [auth 1],
ON [auth 1],
OO [auth 1],
OP [auth 2],
OQ [auth 2],
OR [auth 2],
OS [auth 2],
PD [auth 1],
PE [auth 1],
PI [auth 1],
PJ [auth 1],
PK [auth 1],
PL [auth 1],
PM [auth 1],
PN [auth 1],
PO [auth 1],
PP [auth 2],
PQ [auth 2],
PR [auth 2],
QD [auth 1],
QE [auth 1],
QG [auth 1],
QH [auth 1],
QI [auth 1],
QJ [auth 1],
QL [auth 1],
QM [auth 1],
QN [auth 1],
QO [auth 1],
QP [auth 2],
QQ [auth 2],
QR [auth 2],
RC [auth 1D],
RD [auth 1],
RE [auth 1],
RG [auth 1],
RH [auth 1],
RI [auth 1],
RJ [auth 1],
RK [auth 1],
RL [auth 1],
RM [auth 1],
RN [auth 1],
RO [auth 2],
RP [auth 2],
RQ [auth 2],
RR [auth 2],
SC [auth 1D],
SD [auth 1],
SG [auth 1],
SI [auth 1],
SJ [auth 1],
SK [auth 1],
SL [auth 1],
SM [auth 1],
SN [auth 1],
SO [auth 2],
SP [auth 2],
SQ [auth 2],
SR [auth 2],
TD [auth 1],
TE [auth 1],
TI [auth 1],
TJ [auth 1],
TL [auth 1],
TM [auth 1],
TN [auth 1],
TO [auth 2],
TP [auth 2],
TQ [auth 2],
TR [auth 2],
UD [auth 1],
UE [auth 1],
UF [auth 1],
UH [auth 1],
UI [auth 1],
UJ [auth 1],
UL [auth 1],
UM [auth 1],
UN [auth 1],
UO [auth 2],
UP [auth 2],
UQ [auth 2],
UR [auth 2],
VE [auth 1],
VF [auth 1],
VH [auth 1],
VI [auth 1],
VL [auth 1],
VM [auth 1],
VN [auth 1],
VO [auth 2],
VP [auth 2],
VQ [auth 2],
VR [auth 2],
VS [auth 2],
WC [auth 1q],
WD [auth 1],
WE [auth 1],
WF [auth 1],
WH [auth 1],
WI [auth 1],
WK [auth 1],
WL [auth 1],
WM [auth 1],
WN [auth 1],
WO [auth 2],
WQ [auth 2],
WR [auth 2],
WS [auth 2],
XC [auth 1q],
XD [auth 1],
XF [auth 1],
XH [auth 1],
XI [auth 1],
XK [auth 1],
XL [auth 1],
XM [auth 1],
XN [auth 1],
XO [auth 2],
XQ [auth 2],
XR [auth 2],
XS [auth 2],
YC [auth 1],
YE [auth 1],
YF [auth 1],
YH [auth 1],
YI [auth 1],
YK [auth 1],
YL [auth 1],
YM [auth 1],
YN [auth 1],
YO [auth 2],
YP [auth 2],
YQ [auth 2],
YR [auth 2],
YS [auth 2],
ZC [auth 1],
ZE [auth 1],
ZH [auth 1],
ZJ [auth 1],
ZK [auth 1],
ZL [auth 1],
ZM [auth 1],
ZN [auth 1],
ZO [auth 2],
ZQ [auth 2],
ZS [auth 2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.11 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Alexander von Humboldt FoundationGermany--
Swiss National Science FoundationSwitzerland210561

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-15
    Type: Initial release
  • Version 1.1: 2025-12-17
    Changes: Data collection, Database references