9GQN | pdb_00009gqn

Cryo-EM map of dimeric AvrSr35

PDB DOI: https://doi.org/10.2210/pdb9GQN/pdb
EM Map EMD-51507: EMDB EMDataResource

Classification: ANTIFUNGAL PROTEIN
Organism(s): Puccinia graminis f. sp. tritici
Expression System: Nicotiana benthamiana
Mutation(s): No

Deposited: 2024-09-09 Released: 2025-09-24
Deposition Author(s): Macha, A., Gunkel, M., Lawson, A.W., Schulze-Lefert, P., Behrmann, E.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

A versatile protocol for purifying recombinant proteins from Nicotiana benthamiana

Lawson, A.W., Macha, A., Neumann, U., Gunkel, M., Chai, J.J., Behrmann, E., Schulze-Lefert, P.

To be published.

Macromolecule Content

Total Structure Weight: 142.43 kDa
Atom Count: 6,718
Modeled Residue Count: 816
Deposited Residue Count: 1,250
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Avirulence factor	A, B	625	Puccinia graminis f. sp. tritici	Mutation(s): 0 Gene Names: PGT21_019944, PGTUg99_030428
UniProt
Find proteins for A0A5B0N367 (Puccinia graminis f. sp. tritici) Explore A0A5B0N367 Go to UniProtKB: A0A5B0N367
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A5B0N367
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.4
MODEL REFINEMENT	PHENIX	1.21-5207

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-09-24

Deposition Author(s):

Schulze-Lefert, P.

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	INST 216/949-1 FUGG
German Research Foundation (DFG)	Germany	INST 216/512/1 FUGG

Revision History (Full details and data files)

Version 1.0: 2025-09-24
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.