9FVT | pdb_00009fvt

Crystal structure of marine sulfatase (OpSulf1) from Ochrovirga pacifica

• PDB DOI: https://doi.org/10.2210/pdb9FVT/pdb

• Classification: HYDROLASE
• Organism(s): Ochrovirga pacifica
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2024-06-28 Released: 2024-07-17 
• Deposition Author(s): Solanki, V.A., Krull, J., Hehemann, J.H.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.49 Å
• R-Value Free: 
  0.196 (Depositor), 0.196 (DCC) 
• R-Value Work: 
  0.166 (Depositor), 0.175 (DCC) 

Starting Model: in silico

Literature

Crystal structure of marine sulfatase (OpSulf1) from Ochrovirga pacifica

Solanki, V.A., Krull, J., Hehemann, J.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 238.33 kDa 
• Atom Count: 18,258 
• Modeled Residue Count: 2,076 
• Deposited Residue Count: 2,076 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sulfatase	A, B, C, D	519	Ochrovirga pacifica	Mutation(s): 0  Gene Names: Sulfatase
UniProt
Find proteins for A0AAX7FM35 (Ochrovirga pacifica) Explore A0AAX7FM35  Go to UniProtKB:  A0AAX7FM35

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG (Subject of Investigation/LOI)	E [auth A], F [auth B], G [auth C], H [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.49 Å
• R-Value Free:  0.196 (Depositor), 0.196 (DCC) 
• R-Value Work:  0.166 (Depositor), 0.175 (DCC) 

Diffraction Data: https://doi.org/10.18430/M39FVT

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.268	α = 90
b = 115.268	β = 90
c = 169.831	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PHASER	phasing
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-17 
Deposition Author(s): Solanki, V.A., Krull, J., Hehemann, J.H.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	HE 7217/2-3

Revision History  

• Version 1.0: 2024-07-17
  Type: Initial release
  
• Version 1.1: 2025-03-05
  Changes: Derived calculations, Structure summary