9EQ3

Deposited: 2024-03-20 Released: 2024-04-10
Deposition Author(s): Andersen, G.R., Jensen, R.K.
Funding Organization(s): Novo Nordisk Foundation, Lundbeckfonden, Danish Council for Independent Research

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
IgE HMM5 heavy chain	A [auth H], D [auth X]	551	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
IgE HMM5 light chain	B [auth L], E [auth Y]	217	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
High affinity immunoglobulin epsilon receptor subunit alpha	C [auth R]	171	Homo sapiens	Mutation(s): 0 Gene Names: FCER1A, FCE1A
UniProt & NIH Common Fund Data Resources
Find proteins for P12319 (Homo sapiens) Explore P12319 Go to UniProtKB: P12319
PHAROS: P12319 GTEx: ENSG00000179639
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P12319
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	F [auth A], J [auth E], N [auth J]	5		N-Glycosylation	Interactions Focus chain F [auth A] Focus chain J [auth E] Focus chain N [auth J] Interactions & Density Focus chain F [auth A] Focus chain J [auth E] Focus chain N [auth J]
Glycosylation Resources
GlyTouCan: G22768VO GlyCosmos: G22768VO GlyGen: G22768VO

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	G [auth B]	5		N-Glycosylation	Interactions Focus chain G [auth B] Interactions & Density Focus chain G [auth B]
Glycosylation Resources
GlyTouCan: G21381MC GlyCosmos: G21381MC GlyGen: G21381MC

Entity ID: 6
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	H [auth C], I [auth D], K [auth F], L [auth G]	3		N-Glycosylation	Interactions Focus chain H [auth C] Focus chain I [auth D] Focus chain K [auth F] Focus chain L [auth G] Interactions & Density Focus chain H [auth C] Focus chain I [auth D] Focus chain K [auth F] Focus chain L [auth G]
Glycosylation Resources
GlyTouCan: G15407YE GlyCosmos: G15407YE GlyGen: G15407YE

Entity ID: 7
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	M [auth I]	2		N-Glycosylation	Interactions Focus chain M [auth I] Interactions & Density Focus chain M [auth I]
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG (Subject of Investigation/LOI) Query on NAG Download Ideal Coordinates CCD File SDF format, chain O [auth H] SDF format, chain P [auth H] SDF format, chain Q [auth H] SDF format, chain R [auth H] SDF format, chain S [auth X] SDF format, chain T [auth X] SDF format, chain U [auth X] SDF format, chain V [auth X] MOL2 format, chain O [auth H] MOL2 format, chain P [auth H] MOL2 format, chain Q [auth H] MOL2 format, chain R [auth H] MOL2 format, chain S [auth X] MOL2 format, chain T [auth X] MOL2 format, chain U [auth X] MOL2 format, chain V [auth X]	O [auth H] P [auth H] Q [auth H] R [auth H] S [auth X] O [auth H], P [auth H], Q [auth H], R [auth H], S [auth X], T [auth X], U [auth X], V [auth X]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain O [auth H] Focus chain P [auth H] Focus chain Q [auth H] Focus chain R [auth H] Focus chain S [auth X] Focus chain T [auth X] Focus chain U [auth X] Focus chain V [auth X] Interactions & Density Focus chain O [auth H] Focus chain P [auth H] Focus chain Q [auth H] Focus chain R [auth H] Focus chain S [auth X] Focus chain T [auth X] Focus chain U [auth X] Focus chain V [auth X]