9EOJ

Vertebrate microtubule-capping gamma-tubulin ring complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 17.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

gamma-TuRC asymmetry induces local protofilament mismatch at the RanGTP-stimulated microtubule minus end.

Vermeulen, B.J.Bohler, A.Gao, Q.Neuner, A.Zupa, E.Chu, Z.Wurtz, M.Jakle, U.Gruss, O.J.Pfeffer, S.Schiebel, E.

(2024) EMBO J 

  • DOI: https://doi.org/10.1038/s44318-024-00087-4
  • Primary Citation of Related Structures:  
    9EOJ

  • PubMed Abstract: 

    The γ-tubulin ring complex (γ-TuRC) is a structural template for de novo microtubule assembly from α/β-tubulin units. The isolated vertebrate γ-TuRC assumes an asymmetric, open structure deviating from microtubule geometry, suggesting that γ-TuRC closure may underlie regulation of microtubule nucleation. Here, we isolate native γ-TuRC-capped microtubules from Xenopus laevis egg extract nucleated through the RanGTP-induced pathway for spindle assembly and determine their cryo-EM structure. Intriguingly, the microtubule minus end-bound γ-TuRC is only partially closed and consequently, the emanating microtubule is locally misaligned with the γ-TuRC and asymmetric. In the partially closed conformation of the γ-TuRC, the actin-containing lumenal bridge is locally destabilised, suggesting lumenal bridge modulation in microtubule nucleation. The microtubule-binding protein CAMSAP2 specifically binds the minus end of γ-TuRC-capped microtubules, indicating that the asymmetric minus end structure may underlie recruitment of microtubule-modulating factors for γ-TuRC release. Collectively, we reveal a surprisingly asymmetric microtubule minus end protofilament organisation diverging from the regular microtubule structure, with direct implications for the kinetics and regulation of nucleation and subsequent modulation of microtubules during spindle assembly.


  • Organizational Affiliation

    Zentrum für Molekulare Biologie, Universität Heidelberg, DKFZ-ZMBH Allianz, Heidelberg, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mitotic-spindle organizing protein 1A [auth B],
B [auth D]
72Xenopus laevisMutation(s): 0 
UniProt
Find proteins for Q5U4M5 (Xenopus laevis)
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UniProt GroupQ5U4M5
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 3 homologC [auth Q],
N [auth c],
O [auth d],
P [auth e],
Q [auth f]
906Xenopus laevisMutation(s): 0 
UniProt
Find proteins for O73787 (Xenopus laevis)
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UniProt GroupO73787
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Gamma-tubulin complex componentD [auth R],
J [auth Y],
K [auth Z],
L [auth a],
M [auth b]
896Xenopus laevisMutation(s): 0 
UniProt
Find proteins for A0A8J0T6B8 (Xenopus laevis)
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 6E [auth S]1,698Xenopus laevisMutation(s): 0 
UniProt
Find proteins for A0A974HT83 (Xenopus laevis)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin gamma-1 chain451Xenopus laevisMutation(s): 0 
UniProt
Find proteins for P23330 (Xenopus laevis)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Gamma-tubulin complex componentG [auth U]1,019Xenopus laevisMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Gamma-tubulin complex componentH [auth V],
I [auth W]
666Xenopus laevisMutation(s): 0 
UniProt
Find proteins for Q642S3 (Xenopus laevis)
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 17.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyPF 963/1-4
German Research Foundation (DFG)GermanySchi 195/4-4
Other private--
German Research Foundation (DFG)GermanyINST 35/1503-1 FUGG
German Research Foundation (DFG)GermanyINST 35/1134-1 FUGG
German Research Foundation (DFG)GermanyINST 35/1314-1 FUGG

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-17
    Type: Initial release