Download MendeleyCryo-EM structure of the USP1-UAF1-Ubiquitin complex inhibited by KSQ-4279
Griffith, J.P., Wylie, A.A., Ali, J.A.To be published.
9DI1 | pdb_00009di1
Cryo-EM structure of the USP1-UAF1-Ubiquitin complex inhibited by KSQ-4279
- PDB DOI: https://doi.org/10.2210/pdb9DI1/pdb
- EM Map EMD-46895: EMDB EMDataResource
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2024-09-04 Released: 2025-09-17
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.70 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| WD repeat-containing protein 48 | 677 | Homo sapiens | Mutation(s): 0 Gene Names: WDR48, KIAA1449, UAF1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8TAF3 (Homo sapiens) Explore Q8TAF3 Go to UniProtKB: Q8TAF3 | |||||
PHAROS: Q8TAF3 GTEx: ENSG00000114742 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TAF3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin carboxyl-terminal hydrolase 1 | 785 | Homo sapiens | Mutation(s): 0 Gene Names: USP1 EC: 3.4.19.12 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O94782 (Homo sapiens) Explore O94782 Go to UniProtKB: O94782 | |||||
PHAROS: O94782 GTEx: ENSG00000162607 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O94782 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin | 75 | Homo sapiens | Mutation(s): 0 Gene Names: UBC |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG48 (Homo sapiens) Explore P0CG48 Go to UniProtKB: P0CG48 | |||||
PHAROS: P0CG48 GTEx: ENSG00000150991 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0CG48 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| A1IB8 Query on A1IB8 | E [auth B] | 6-(4-cyclopropyl-6-methoxy-pyrimidin-5-yl)-1-[[4-[1-propan-2-yl-4-(trifluoromethyl)imidazol-2-yl]phenyl]methyl]pyrazolo[3,4-d]pyrimidine C27 H25 F3 N8 O KCBWAFJCKVKYHO-UHFFFAOYSA-N |  | ||
| A1A4Y Query on A1A4Y | F [auth B] | 3-(methanesulfonyl)propan-1-amine C4 H11 N O2 S QUYFSHOLLKVPGX-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | D [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.70 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2025-09-17 Deposition Author(s): Griffith, J.P., Wylie, A.A., Ali, J.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-09-17
Type: Initial release
