9DCJ | pdb_00009dcj

Pentameric Structure of MERS-CoV Envelope Protein Transmembrane Domain Determined by Solid-State NMR


Experimental Data Snapshot

  • Method: SOLID-STATE NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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Literature

Ion channel structure and function of the MERS coronavirus E protein.

Sucec, I.Xia, B.Somberg, N.H.Wang, Y.Jo, H.Li, S.Perrone, B.Gao, Z.Hong, M.

(2025) Sci Adv 11: eadx1788-eadx1788

  • DOI: https://doi.org/10.1126/sciadv.adx1788
  • Primary Citation Related Structures: 
    9DCJ

  • PubMed Abstract: 

    Coronavirus envelope (E) proteins form drug-targeted ion channels that cause virulence to infected cells. The Middle East respiratory syndrome (MERS) virus has high mortality rates, but its E structure and function are unknown. We report the single-channel conductance and structure of membrane-bound MERS E protein. MERS E conducts K + ions with a unitary conductance of 113 picosiemens, fivefold larger than the conductance of severe acute respiratory syndrome coronavirus 2 E. Solid-state nuclear magnetic resonance data indicate that the MERS E transmembrane domain forms a five-helix bundle that spans the lipid bilayer. The amino-terminal helical interface features multiple interacting phenylalanine (Phe) residues and an asparagine (Asn), whereas the carboxyl-terminal channel pore contains Phe 33 . Mutation of Phe 17 abolished K + conductance, whereas mutations of Phe 33 and Asn 15 suppressed most channel activity. These results indicate that MERS E contains two Phe-centered ion-conduction apparatuses, which likely permeate ions through cation-π interactions, providing the structural basis for developing antiviral drugs to inhibit this pathogenic viroporin.


  • Organizational Affiliation
    • Department of Chemistry, Massachusetts Institute of Technology, 170 Albany Street, Cambridge, MA 02139, USA.

Macromolecule Content 

  • Total Structure Weight: 21.55 kDa 
  • Atom Count: 1,520 
  • Modeled Residue Count: 190 
  • Deposited Residue Count: 190 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Envelope small membrane protein
A, B, C, D, E
38Betacoronavirus England 1Mutation(s): 2 
Gene Names: EsM4
UniProt
Find proteins for K9N5R3 (Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012))
Explore K9N5R3 
Go to UniProtKB:  K9N5R3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK9N5R3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLID-STATE NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States6951834

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-24
    Type: Initial release
  • Version 1.1: 2026-04-08
    Changes: Database references