9DCJ | pdb_00009dcj

Pentameric Structure of MERS-CoV Envelope Protein Transmembrane Domain Determined by Solid-State NMR


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D NCaCx15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 800
23D NCoCx15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 800
33D CoNCa15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 800
42D CC 100 ms15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 800
53D CCC15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 600
203D NCaCx15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 600
62D CC 300 ms8 % w/w 1,3-glycerol, 2-glycerol 13C MERS ENTM, 21 % w/w POPC, 9 % w/w POPE, 10 % w/w POPS, 4 % w/w cholesterol, 41 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 600
72D NhhC 2 ms8 % w/w [U-13C; U-15N] MERS ENTM, 21 % w/w POPC, 9 % w/w POPE, 10 % w/w POPS, 4 % w/w cholesterol, 41 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE III 600
82D NhhC 2 ms8 % w/w 1,3 glycerol [U-13C; U-15N] MERS ENTM, 21 % w/w POPC, 9 % w/w POPE, 10 % w/w POPS, 4 % w/w cholesterol, 41 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 800
172D CC 300 ms8 % w/w 1,3 glycerol [U-13C; U-15N] MERS ENTM, 21 % w/w POPC, 9 % w/w POPE, 10 % w/w POPS, 4 % w/w cholesterol, 41 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 800
91D CODEX17 % w/w 19F MERS ENTM, 21 % w/w POPC, 9 % w/w POPE, 9 % w/w POPS, 3 % w/w cholesterol, 40 % w/w water95% H2O/5% D2O0.025 M7.41 atm253Bruker AVANCE III 600
101D CODEX20 % w/w 19F MERS ENTM, 19 % w/w POPC, 8 % w/w POPE, 9 % w/w POPS, 3 % w/w cholesterol, 40 % w/w water95% H2O/5% D2O0.025 M7.41 atm253Bruker AVANCE III 600
111D CODEX10 % w/w 19F MERS ENTM, 24 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 40 % w/w water95% H2O/5% D2O0.025 M7.41 atm253Bruker AVANCE III 600
122D HF HETCOR17 % w/w 19F MERS ENTM, 21 % w/w POPC, 9 % w/w POPE, 9 % w/w POPS, 3 % w/w cholesterol, 40 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE III 600
132D DIPSHIFT15 % w/w [U-13C; U-15N] MERS ENTM, 38 % w/w POPC, 10 % w/w POPG, 38 % w/w water95% H2O/5% D2O0.025 M7.41 atm303Bruker AVANCE NEO 800
142D NCa water-ed15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.025 M7.41 atm290Bruker AVANCE NEO 800
182D CC 24 ms15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.1 M4.51 atm286Bruker AVANCE NEO 800
152D NCa water-ed15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.1 M4.51 atm286Bruker AVANCE NEO 800
192D CC 24 ms15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.2 M7.51 atm288Bruker AVANCE NEO 800
162D NCa water-ed15 % w/w [U-13C; U-15N] MERS ENTM, 23 % w/w POPC, 10 % w/w POPE, 11 % w/w POPS, 4 % w/w cholesterol, 38 % w/w water95% H2O/5% D2O0.2 M7.51 atm288Bruker AVANCE NEO 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO800
2BrukerAVANCE III600
3BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCcpNmr Analysisv3CCPN
2structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
3collectionTopSpinBruker Biospin
4peak pickingCcpNmr Analysisv3CCPN