9D34 | pdb_00009d34

FIP200 C-terminal CLAW domain (resid. 1490-1594) in complex with phosphorylated TNIP1 FIP200 interacting peptide

PDB DOI: https://doi.org/10.2210/pdb9D34/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG, Escherichia coli
Mutation(s): No

Deposited: 2024-08-09 Released: 2024-11-06
Deposition Author(s): Radford, K.M., Rosencrans, W., Chou, T.F.
Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.42 Å
R-Value Free:
0.234 (Depositor), 0.233 (DCC)
R-Value Work:
0.202 (Depositor), 0.202 (DCC)
R-Value Observed:
0.204 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

FIP200 C-terminal CLAW domain (resid. 1490-1594) in complex with phosphorylated TNIP1 FIP200 interacting peptide

Radford, K.M., Rosencrans, W., Chou, T.F.

To be published.

Macromolecule Content

Total Structure Weight: 13.53 kDa
Atom Count: 802
Modeled Residue Count: 95
Deposited Residue Count: 118
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RB1-inducible coiled-coil protein 1	A	105	Homo sapiens	Mutation(s): 0 Gene Names: RB1CC1, KIAA0203, RBICC
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TDY2 (Homo sapiens) Explore Q8TDY2 Go to UniProtKB: Q8TDY2
PHAROS: Q8TDY2 GTEx: ENSG00000023287
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8TDY2
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
TNFAIP3-interacting protein 1	B [auth C]	13	Homo sapiens	Mutation(s): 0 Gene Names: TNIP1, KIAA0113, NAF1
UniProt & NIH Common Fund Data Resources
Find proteins for Q15025 (Homo sapiens) Explore Q15025 Go to UniProtKB: Q15025
PHAROS: Q15025 GTEx: ENSG00000145901
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q15025
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
SEP Query on SEP	B [auth C]	L-PEPTIDE LINKING	C₃ H₈ N O₆ P		SER

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.42 Å
R-Value Free: 0.234 (Depositor), 0.233 (DCC)
R-Value Work: 0.202 (Depositor), 0.202 (DCC)
R-Value Observed: 0.204 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.339	α = 90
b = 51.339	β = 90
c = 88.28	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-11-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)	United States	--

Revision History (Full details and data files)

Version 1.0: 2024-11-06
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.