9D34 | pdb_00009d34

FIP200 C-terminal CLAW domain (resid. 1490-1594) in complex with phosphorylated TNIP1 FIP200 interacting peptide

• PDB DOI: https://doi.org/10.2210/pdb9D34/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG, Escherichia coli
• Mutation(s): No 


• Deposited: 2024-08-09 Released: 2024-11-06 
• Deposition Author(s): Radford, K.M., Rosencrans, W., Chou, T.F.
• Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.42 Å
• R-Value Free: 
  0.234 (Depositor), 0.233 (DCC) 
• R-Value Work: 
  0.202 (Depositor), 0.202 (DCC) 
• R-Value Observed: 
  0.204 (Depositor) 

Starting Model: experimental

Literature

FIP200 C-terminal CLAW domain (resid. 1490-1594) in complex with phosphorylated TNIP1 FIP200 interacting peptide

Radford, K.M., Rosencrans, W., Chou, T.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 13.53 kDa 
• Atom Count: 802 
• Modeled Residue Count: 95 
• Deposited Residue Count: 118 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RB1-inducible coiled-coil protein 1	A	105	Homo sapiens	Mutation(s): 0  Gene Names: RB1CC1, KIAA0203, RBICC
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TDY2 (Homo sapiens) Explore Q8TDY2  Go to UniProtKB:  Q8TDY2
PHAROS:  Q8TDY2 GTEx:  ENSG00000023287

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
TNFAIP3-interacting protein 1	B [auth C]	13	Homo sapiens	Mutation(s): 0  Gene Names: TNIP1, KIAA0113, NAF1
UniProt & NIH Common Fund Data Resources
Find proteins for Q15025 (Homo sapiens) Explore Q15025  Go to UniProtKB:  Q15025
PHAROS:  Q15025 GTEx:  ENSG00000145901

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
SEP	B [auth C]	L-PEPTIDE LINKING	C3 H8 N O6 P		SER

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.42 Å
• R-Value Free:  0.234 (Depositor), 0.233 (DCC) 
• R-Value Work:  0.202 (Depositor), 0.202 (DCC) 
• R-Value Observed: 0.204 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.339	α = 90
b = 51.339	β = 90
c = 88.28	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-06 
Deposition Author(s): Radford, K.M., Rosencrans, W., Chou, T.F.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)	United States	--

Revision History  

• Version 1.0: 2024-11-06
  Type: Initial release