9A9O | pdb_00009a9o

Complex of the partially open conformation of P. furiosus Mre11-Rad50 bound to dsDNA

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.

PDB DOI: https://doi.org/10.2210/pdb9A9O/pdb
NAKB: 9A9O

Organism(s): Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Mutation(s): No

Deposited: 2025-03-20 Released: 2025-04-09
Deposition Author(s): Canny, M.D., Beikzadeh, M., Kaur, N., Pendse, R., Latham, M.P.

Integrative Structure Snapshot

Multi-Scale: No
Multi-State: No
Ordered-State: No
Deposited Models: 1
Representative Model: 1

wwPDB ValidationFull ReportSummary Report

This is version 1.0 of the entry. See complete history.

Literature

Dynamic conformations of the P. furiosus MR-DNA complex link Mre11 nuclease activity to DNA-stimulated Rad50 ATP hydrolysis

Canny, M.D., Beikzadeh, M., Kaur, N., Pendse, R., Latham, M.P.

(2025) Commun Biol

DOI: https://doi.org/10.1038/s42003-025-08003-0

Macromolecule Content

Total Structure Weight: 217.19 kDa
Atom Count: 13,302
Modeled Residue Count: 1,520
Deposited Residue Count: 1,520
Unique protein chains: 4
Unique nucleic acid chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA double-strand break repair Rad50 ATPase	A, D	192	Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)	Mutation(s): 0 Gene Names: rad50
UniProt
Find proteins for P58301 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore P58301 Go to UniProtKB: P58301
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P58301
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA double-strand break repair Rad50 ATPase	B, E	167	Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)	Mutation(s): 0 Gene Names: rad50
UniProt
Find proteins for P58301 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore P58301 Go to UniProtKB: P58301
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P58301
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA double-strand break repair protein Mre11	C, F	32	Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)	Mutation(s): 0 Gene Names: mre11 EC: 3.1
UniProt
Find proteins for Q8U1N9 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U1N9 Go to UniProtKB: Q8U1N9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8U1N9
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA double-strand break repair protein Mre11	G, H	333	Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)	Mutation(s): 0 Gene Names: mre11 EC: 3.1
UniProt
Find proteins for Q8U1N9 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U1N9 Go to UniProtKB: Q8U1N9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8U1N9
Sequence Annotations Expand
Reference Sequence