9Y8W | pdb_00009y8w

MERS Mpro with EGT710


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.04 Å
  • R-Value Free: 
    0.278 (Depositor), 0.230 (DCC) 
  • R-Value Work: 
    0.228 (Depositor) 
  • R-Value Observed: 
    0.231 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 9Y8W

Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history

Literature

Preclinical characterization of EGT710, an oral non-peptidomimetic reversible covalent SARS-CoV-2 main protease inhibitor.

Moquin, S.A.Lakshminarayana, S.B.Balavenkatraman, K.K.Schiller, H.Claas, A.Bhhatarai, B.Loisios-Konstantinidis, I.Vulic, K.Kurhade, C.Kalveram, B.K.Chen, J.Y.Zou, J.Xie, X.Tandeske, L.Dovala, D.Ornelas, E.Knapp, M.S.Fuller, D.Nguyen, Z.Barkan, D.T.Bebrevska, L.Wright, S.K.Busby, S.A.Blais, J.Shi, P.Y.Gaudet, S.Bergeron, R.Yu, H.Zack, J.Sarko, C.Gu, F.Bradner, J.E.Tallarico, J.A.Diagana, T.T.Papillon, J.P.N.

(2025) NPJ Drug Discov 2

  • DOI: https://doi.org/10.1038/s44386-025-00030-5
  • Primary Citation Related Structures: 
    9Y8W, 9Y8X

  • PubMed Abstract: 

    EGT710 is an orally bioavailable non-peptidomimetic reversible covalent coronavirus main protease (Mpro) inhibitor with low nM cellular activity against SARS-CoV-2. Twice daily dosing of 10 mg/kg of EGT710 decreased lung viral load in a mouse model of SARS-CoV-2 infection to below the limit of detection. Resistance selection resulted in the emergence of several Mpro mutations, with recombinant viruses containing L50F + E166A substitutions showing the largest shift in potency. Development of a viral kinetics model using viremia data from clinical trials, along with a human physiologically based pharmacokinetic model, predicted efficacy in humans with once daily oral doses of >360 mg. EGT710 displays favorable pharmacokinetic properties and an acceptable in vitro and in vivo safety profile, with human exposures at the recommended clinical dose of 600 mg predicted to be below the no adverse effect level in preclinical toxicology studies. Together, EGT710 has a promising preclinical profile and has completed a Phase I study.


  • Organizational Affiliation
    • Biomedical Research, Novartis, Emeryville, CA, USA. stephanie.moquin@novartis.com.

Macromolecule Content 

  • Total Structure Weight: 134.96 kDa 
  • Atom Count: 9,156 
  • Modeled Residue Count: 1,201 
  • Deposited Residue Count: 1,224 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
3C-like proteinase nsp5
A, B, C, D
306Middle East respiratory syndrome-related coronavirusMutation(s): 0 
Gene Names: rep1a-1b
EC: 3.4.22
UniProt
Find proteins for K9N7C7 (Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012))
Explore K9N7C7 
Go to UniProtKB:  K9N7C7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK9N7C7
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.04 Å
  • R-Value Free:  0.278 (Depositor), 0.230 (DCC) 
  • R-Value Work:  0.228 (Depositor) 
  • R-Value Observed: 0.231 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 87.114α = 90
b = 94.645β = 90
c = 153.924γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-24
    Type: Initial release
  • Version 1.1: 2026-07-15
    Changes: Database references