9WX3 | pdb_00009wx3

Structure of flagellar hook subunit FlgE D-II domain in Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 
    0.202 (Depositor), 0.209 (DCC) 
  • R-Value Work: 
    0.166 (Depositor), 0.177 (DCC) 
  • R-Value Observed: 
    0.168 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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Literature

Structural characterization of Pseudomonas aeruginosa flagellar hook FlgE reveals a novel beta-hairpin element involved in inflammatory modulation.

You, Y.Lin, S.Yang, F.Chen, Z.Ye, F.Guo, Y.He, B.Cao, Y.Gu, J.Lu, G.

(2025) Int J Biol Macromol 332: 148466-148466

  • DOI: https://doi.org/10.1016/j.ijbiomac.2025.148466
  • Primary Citation Related Structures: 
    9WWJ, 9WX3

  • PubMed Abstract: 

    The flagellar hook subunit FlgE of Pseudomonas aeruginosa (Pa-FlgE) is a core component of the bacterial surface flagellum. It is also identified as an important virulence factor capable of modulating host inflammatory response. Herein, we report the high-resolution crystal structures of Pa-FlgE domain I (D-I) and domain II (D-II), both of which adopt predominantly β-structure. Structural comparison among Pa-FlgE and its orthologs shows that D-I and the core-barrel of D-II are highly conserved. Two peripheral insertions of variable length and structure, however, are identified in FlgE D-II. In Pa-FlgE, these two insertions fold as a loop element and a β-hairpin element, respectively. Notably, these two elements are solvent-exposed and extend towards one another, and deletion of the two elements either simultaneously or individually is shown to abolish the immunomodulation activity of Pa-FlgE. While the loop element is present in other FlgE orthologs, the β-hairpin is unique to Pa-FlgE, suggesting that P. aeruginosa has evolved this distinctive β-hairpin in flagellar hook to modulate the inflammatory response during infection.


  • Organizational Affiliation
    • Department of Emergency Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, Sichuan, 610041, China.

Macromolecule Content 

  • Total Structure Weight: 41.33 kDa 
  • Atom Count: 3,400 
  • Modeled Residue Count: 392 
  • Deposited Residue Count: 394 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar hook protein FlgEA [auth D],
B [auth A]
197Pseudomonas aeruginosa PAO1Mutation(s): 0 
Gene Names: flgEPA1080
UniProt
Find proteins for Q9I4P9 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore Q9I4P9 
Go to UniProtKB:  Q9I4P9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9I4P9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free:  0.202 (Depositor), 0.209 (DCC) 
  • R-Value Work:  0.166 (Depositor), 0.177 (DCC) 
  • R-Value Observed: 0.168 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.453α = 90
b = 75.304β = 90
c = 89.752γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data

  • Released Date: 2025-12-24 
  • Deposition Author(s): Lu, G., You, Y.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-24
    Type: Initial release