9U9N | pdb_00009u9n

Solution structure of the Human Prostate stem cell antigen (PSCA), water-soluble domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Pro-Inflammatory Protein PSCA Is Upregulated in Neurological Diseases and Targets beta 2-Subunit-Containing nAChRs.

Shulepko, M.A.Che, Y.Paramonov, A.S.Kocharovskaya, M.V.Kulbatskii, D.S.Ivanova, A.A.Chugunov, A.O.Bychkov, M.L.Kirichenko, A.V.Shenkarev, Z.O.Kirpichnikov, M.P.Lyukmanova, E.N.

(2025) Biomolecules 15

  • DOI: https://doi.org/10.3390/biom15101381
  • Primary Citation of Related Structures:  
    9U9N

  • PubMed Abstract: 

    Prostate stem cell antigen (PSCA) is a Ly6/uPAR protein that targets neuronal nicotinic acetylcholine receptors (nAChRs). It exists in membrane-tethered and soluble forms, with the latter upregulated in Alzheimer's disease. We hypothesize that PSCA may be linked to a wider spectrum of neurological diseases and could induce neuroinflammation. Indeed, PSCA expression is significantly upregulated in the brain of patients with multiple sclerosis, Huntington's disease, Down syndrome, bipolar disorder, and HIV-associated dementia. To investigate PSCA's structure, pharmacology, and inflammatory function, we produced a correctly folded water-soluble recombinant analog (ws-PSCA). In primary hippocampal neurons and astrocytes, ws-PSCA differently regulates secretion of inflammatory factors and adhesion molecules and induces pro-inflammatory responses by increasing TNFβ secretion. Heteronuclear NMR and 15 N relaxation measurements reveal a classical β-structural three-finger fold with conformationally disordered loops II and III. Positive charge clustering on the molecular surface suggests the functional importance of ionic interactions by these loops. Electrophysiological studies in Xenopus oocytes point on ws-PSCA inhibition of α3β2-, high-, and low-sensitive variants of α4β2- (IC 50 ~50, 27, and 15 μM, respectively) but not α4β4-nAChRs, suggesting targeting of the β2 subunit. Ensemble docking and molecular dynamics simulations predict PSCA binding to high-sensitive α4β2-nAChR at α4/β2 and β2/β2 interfaces. Complexes are stabilized by ionic and hydrogen bonds between PSCA's loops II and III and the primary and complementary receptor subunits, including glycosyl groups. This study gives new structural and functional insights into PSCA's interaction with molecular targets and provides clues to understand its role in the brain function and mental disorders.


  • Organizational Affiliation
    • Faculty of Biology, Shenzhen MSU-BIT University, Shenzhen 518172, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Prostate stem cell antigen76Homo sapiensMutation(s): 0 
Gene Names: PSCAUNQ206/PRO232
UniProt & NIH Common Fund Data Resources
Find proteins for O43653 (Homo sapiens)
Explore O43653 
Go to UniProtKB:  O43653
PHAROS:  O43653
GTEx:  ENSG00000167653 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO43653
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-17
    Type: Initial release