9U7M | pdb_00009u7m

Solution NMR structure of SA-XV peptide bound to SDS micelle.


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 9U7M

This is version 1.2 of the entry. See complete history

Literature

SA-XV, a 15-amino acid fragment of host defense peptide S100A12, targets mitochondria and is protective against fungal infections.

Agarwal, R.Biswas, K.Agrawal, A.Shankar, N.N.Kundu, S.Roy, D.Son, D.Harikishore, A.Yennamalli, R.M.Lee, D.Bhunia, A.Roy, S.

(2025) J Biol Chem 301: 110743-110743

  • DOI: https://doi.org/10.1016/j.jbc.2025.110743
  • Primary Citation Related Structures: 
    9U7M

  • PubMed Abstract: 

    Fungal infections are a huge emerging crisis, with more than 2 million people infected worldwide annually. Corneal infections caused by fungus are the major cause of vision loss and often warrant corneal transplantation. Both Fusarium spp. and Candida spp. are critical etiological agents of fungal keratitis and also common causes for invasive fungal infections with high mortality rates. In the previous work, we described growth inhibition of Fusarium spp. by S100A12, a host antimicrobial peptide. Here, to optimize a potential therapeutic, we have studied a 15-amino acid fragment of S100A12, SA-XV. Interestingly, SA-XV demonstrated remarkable antifungal activities, similar to the parent peptide, against both Fusarium spp. and Candida spp. SA-XV is a cell-penetrating peptide, and once internalized, it binds to fungal DNA, halts the cell cycle, and disrupts mitochondria, leading to the generation of reactive oxygen species and cell damage. The atomistic structure of the peptide determined by NMR reveals that SA-XV associates with the fungal membrane. The structural changes in SA-XV from α-helical to random coil conformation were observed in all-atom simulations. In addition, SA-XV aids in wound healing of corneal epithelial cells and attenuates the fungal burden in a murine model of fungal keratitis. Our results clearly demonstrate SA-XV as a promising antifungal candidate that targets both filamentous and nonfilamentous fungi for alternative therapeutic interventions.


  • Organizational Affiliation
    • Prof. Brien Holden Eye Research Centre, LV Prasad Eye Institute, Hyderabad, India; Dr Chigurupati Nageswara Rao Ocular Pharmacology Research Centre, LV Prasad Eye Institute, Hyderabad, India; Graduate Studies, Manipal Academy of Higher Education, Manipal, India.

Macromolecule Content 

  • Total Structure Weight: 1.69 kDa 
  • Atom Count: 119 
  • Modeled Residue Count: 15 
  • Deposited Residue Count: 15 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Calcitermin15Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P80511 (Homo sapiens)
Explore P80511 
Go to UniProtKB:  P80511
PHAROS:  P80511
GTEx:  ENSG00000163221 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP80511
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Velux StiftungSwitzerlandP-1834
Science and Engineering Research Board (SERB)IndiaSPG/2020/000200

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-24
    Type: Initial release
  • Version 1.1: 2025-10-08
    Changes: Database references
  • Version 1.2: 2025-10-29
    Changes: Database references