9SHH | pdb_00009shh

ATP-bound human mitochondrial Hsp60-Hsp10 bullet complex (C7)

PDB DOI: https://doi.org/10.2210/pdb9SHH/pdb
EM Map EMD-54899: EMDB EMDataResource

Classification: CHAPERONE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-08-27 Released: 2025-12-10
Deposition Author(s): Lopez-Alonso, J.P., Tascon, I., Ubarretxena-Belandia, I.
Funding Organization(s): Ministerio de Ciencia e Innovacion (MCIN)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.11 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Models: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural remodeling of the mitochondrial protein biogenesis machinery upon proteostatic stress

Ehses, K., Lopez-Alonso, J.P., Gonzalez, A., Tascon, I., Ubarretxena-Belandia, I., Fernandez-Busnadiego, R.

To be published.

Macromolecule Content

Total Structure Weight: 870.5 kDa
Atom Count: 63,040
Modeled Residue Count: 8,078
Deposited Residue Count: 8,092
Unique protein chains: 2

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
60 kDa heat shock protein, mitochondrial	A C [auth B] E [auth C] G [auth D] I [auth E] A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	527	Homo sapiens	Mutation(s): 0 Gene Names: HSPD1, HSP60 EC: 5.6.1.7
UniProt & NIH Common Fund Data Resources
Find proteins for P10809 (Homo sapiens) Explore P10809 Go to UniProtKB: P10809
PHAROS: P10809 GTEx: ENSG00000144381
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P10809
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
10 kDa heat shock protein, mitochondrial	B [auth a] D [auth b] F [auth c] H [auth d] J [auth e] B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g]	102	Homo sapiens	Mutation(s): 0 Gene Names: HSPE1
UniProt & NIH Common Fund Data Resources
Find proteins for P61604 (Homo sapiens) Explore P61604 Go to UniProtKB: P61604
PHAROS: P61604 GTEx: ENSG00000115541
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61604
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP (Subject of Investigation/LOI) Query on ATP Download:Ideal Coordinates CCD File SDF format, chain ZA [auth K] SDF format, chain Y [auth B] SDF format, chain WA [auth J] SDF format, chain V [auth A] SDF format, chain TA [auth I] SDF format, chain QA [auth H] SDF format, chain NA [auth G] SDF format, chain KA [auth F] SDF format, chain IB [auth N] SDF format, chain HA [auth E] SDF format, chain FB [auth M] SDF format, chain EA [auth D] SDF format, chain CB [auth L] SDF format, chain BA [auth C] MOL2 format, chain ZA [auth K] MOL2 format, chain Y [auth B] MOL2 format, chain WA [auth J] MOL2 format, chain V [auth A] MOL2 format, chain TA [auth I] MOL2 format, chain QA [auth H] MOL2 format, chain NA [auth G] MOL2 format, chain KA [auth F] MOL2 format, chain IB [auth N] MOL2 format, chain HA [auth E] MOL2 format, chain FB [auth M] MOL2 format, chain EA [auth D] MOL2 format, chain CB [auth L] MOL2 format, chain BA [auth C] mmCIF format, chain ZA [auth K] mmCIF format, chain Y [auth B] mmCIF format, chain WA [auth J] mmCIF format, chain V [auth A] mmCIF format, chain TA [auth I] mmCIF format, chain QA [auth H] mmCIF format, chain NA [auth G] mmCIF format, chain KA [auth F] mmCIF format, chain IB [auth N] mmCIF format, chain HA [auth E] mmCIF format, chain FB [auth M] mmCIF format, chain EA [auth D] mmCIF format, chain CB [auth L] mmCIF format, chain BA [auth C]	BA [auth C] CB [auth L] EA [auth D] FB [auth M] HA [auth E] BA [auth C], CB [auth L], EA [auth D], FB [auth M], HA [auth E], IB [auth N], KA [auth F], NA [auth G], QA [auth H], TA [auth I], V [auth A], WA [auth J], Y [auth B], ZA [auth K]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain BA [auth C] Focus chain CB [auth L] Focus chain EA [auth D] Focus chain FB [auth M] Focus chain HA [auth E] Focus chain IB [auth N] Focus chain KA [auth F] Focus chain NA [auth G] Focus chain QA [auth H] Focus chain TA [auth I] Focus chain V [auth A] Focus chain WA [auth J] Focus chain Y [auth B] Focus chain ZA [auth K] Interactions & Density Focus chain BA [auth C] Focus chain CB [auth L] Focus chain EA [auth D] Focus chain FB [auth M] Focus chain HA [auth E] Focus chain IB [auth N] Focus chain KA [auth F] Focus chain NA [auth G] Focus chain QA [auth H] Focus chain TA [auth I] Focus chain V [auth A] Focus chain WA [auth J] Focus chain Y [auth B] Focus chain ZA [auth K]
K (Subject of Investigation/LOI) Query on K Download:Ideal Coordinates CCD File SDF format, chain DA [auth C] SDF format, chain SA [auth H] SDF format, chain YA [auth J] SDF format, chain X [auth A] SDF format, chain VA [auth I] SDF format, chain PA [auth G] SDF format, chain MA [auth F] SDF format, chain KB [auth N] SDF format, chain JA [auth E] SDF format, chain HB [auth M] SDF format, chain GA [auth D] SDF format, chain EB [auth L] SDF format, chain BB [auth K] SDF format, chain AA [auth B] MOL2 format, chain DA [auth C] MOL2 format, chain SA [auth H] MOL2 format, chain YA [auth J] MOL2 format, chain X [auth A] MOL2 format, chain VA [auth I] MOL2 format, chain PA [auth G] MOL2 format, chain MA [auth F] MOL2 format, chain KB [auth N] MOL2 format, chain JA [auth E] MOL2 format, chain HB [auth M] MOL2 format, chain GA [auth D] MOL2 format, chain EB [auth L] MOL2 format, chain BB [auth K] MOL2 format, chain AA [auth B] mmCIF format, chain DA [auth C] mmCIF format, chain SA [auth H] mmCIF format, chain YA [auth J] mmCIF format, chain X [auth A] mmCIF format, chain VA [auth I] mmCIF format, chain PA [auth G] mmCIF format, chain MA [auth F] mmCIF format, chain KB [auth N] mmCIF format, chain JA [auth E] mmCIF format, chain HB [auth M] mmCIF format, chain GA [auth D] mmCIF format, chain EB [auth L] mmCIF format, chain BB [auth K] mmCIF format, chain AA [auth B]	AA [auth B] BB [auth K] DA [auth C] EB [auth L] GA [auth D] AA [auth B], BB [auth K], DA [auth C], EB [auth L], GA [auth D], HB [auth M], JA [auth E], KB [auth N], MA [auth F], PA [auth G], SA [auth H], VA [auth I], X [auth A], YA [auth J]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N		Interactions Focus chain AA [auth B] Focus chain BB [auth K] Focus chain DA [auth C] Focus chain EB [auth L] Focus chain GA [auth D] Focus chain HB [auth M] Focus chain JA [auth E] Focus chain KB [auth N] Focus chain MA [auth F] Focus chain PA [auth G] Focus chain SA [auth H] Focus chain VA [auth I] Focus chain X [auth A] Focus chain YA [auth J] Interactions & Density Focus chain AA [auth B] Focus chain BB [auth K] Focus chain DA [auth C] Focus chain EB [auth L] Focus chain GA [auth D] Focus chain HB [auth M] Focus chain JA [auth E] Focus chain KB [auth N] Focus chain MA [auth F] Focus chain PA [auth G] Focus chain SA [auth H] Focus chain VA [auth I] Focus chain X [auth A] Focus chain YA [auth J]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain Z [auth B] SDF format, chain XA [auth J] SDF format, chain W [auth A] SDF format, chain UA [auth I] SDF format, chain RA [auth H] SDF format, chain OA [auth G] SDF format, chain LA [auth F] SDF format, chain JB [auth N] SDF format, chain IA [auth E] SDF format, chain GB [auth M] SDF format, chain FA [auth D] SDF format, chain DB [auth L] SDF format, chain CA [auth C] SDF format, chain AB [auth K] MOL2 format, chain Z [auth B] MOL2 format, chain XA [auth J] MOL2 format, chain W [auth A] MOL2 format, chain UA [auth I] MOL2 format, chain RA [auth H] MOL2 format, chain OA [auth G] MOL2 format, chain LA [auth F] MOL2 format, chain JB [auth N] MOL2 format, chain IA [auth E] MOL2 format, chain GB [auth M] MOL2 format, chain FA [auth D] MOL2 format, chain DB [auth L] MOL2 format, chain CA [auth C] MOL2 format, chain AB [auth K] mmCIF format, chain Z [auth B] mmCIF format, chain XA [auth J] mmCIF format, chain W [auth A] mmCIF format, chain UA [auth I] mmCIF format, chain RA [auth H] mmCIF format, chain OA [auth G] mmCIF format, chain LA [auth F] mmCIF format, chain JB [auth N] mmCIF format, chain IA [auth E] mmCIF format, chain GB [auth M] mmCIF format, chain FA [auth D] mmCIF format, chain DB [auth L] mmCIF format, chain CA [auth C] mmCIF format, chain AB [auth K]	AB [auth K] CA [auth C] DB [auth L] FA [auth D] GB [auth M] AB [auth K], CA [auth C], DB [auth L], FA [auth D], GB [auth M], IA [auth E], JB [auth N], LA [auth F], OA [auth G], RA [auth H], UA [auth I], W [auth A], XA [auth J], Z [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain AB [auth K] Focus chain CA [auth C] Focus chain DB [auth L] Focus chain FA [auth D] Focus chain GB [auth M] Focus chain IA [auth E] Focus chain JB [auth N] Focus chain LA [auth F] Focus chain OA [auth G] Focus chain RA [auth H] Focus chain UA [auth I] Focus chain W [auth A] Focus chain XA [auth J] Focus chain Z [auth B] Interactions & Density Focus chain AB [auth K] Focus chain CA [auth C] Focus chain DB [auth L] Focus chain FA [auth D] Focus chain GB [auth M] Focus chain IA [auth E] Focus chain JB [auth N] Focus chain LA [auth F] Focus chain OA [auth G] Focus chain RA [auth H] Focus chain UA [auth I] Focus chain W [auth A] Focus chain XA [auth J] Focus chain Z [auth B]