9RBD | pdb_00009rbd

Cryo-EM structure of ANP amyloids from left atrial appendage of atrial fibrillation patient - polymorph A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.96 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural characterization of atrial natriuretic peptide amyloid fibrils from patients with atrial fibrillation.

Broggini, L.Piccoli, M.Chaves-Sanjuan, A.Bonnet, D.M.V.Cirillo, F.Visentin, C.Sonzini, F.Signorelli, P.Lavota, I.Milazzo, M.Nonnis, S.Menicanti, L.Ciconte, G.Pappone, C.Anastasia, L.Ricagno, S.

(2025) Nat Commun 16: 9556-9556

  • DOI: https://doi.org/10.1038/s41467-025-64618-1
  • Primary Citation of Related Structures:  
    9RBD, 9RBW

  • PubMed Abstract: 

    Isolated atrial amyloidosis (IAA) is a localized cardiac disorder characterized by atrial natriuretic peptide (ANP) amyloids deposition in the atria, linked to aging and atrial fibrillation (AF). While monomeric ANP regulates blood pressure, its dimeric form is associated with cardiovascular conditions, including AF. The mechanistic link between ANP aggregation, IAA, and AF remains unclear. Here, we present the first high-resolution structural characterization of ANP fibrils extracted from AF patients, revealing two distinct fibril polymorphs. Both present covalent ANP dimers as building blocks but diverge in their structural architecture: one features antiparallel dimers stabilized by a single disulfide bond, while the other consists of parallel dimers bridged by two interchain disulfide bonds. These fibril morphologies were conserved across patients, suggesting a common aggregation mechanism in IAA. Overall, our findings ascribe to dimeric ANP a critical role in amyloid formation, offering promising directions for earlier detection and treatment of IAA.


  • Organizational Affiliation
    • Institute for Molecular and Translational Cardiology (IMTC), IRCCS Policlinico San Donato, Piazza Malan, Milan, San Donato Milanese, Italy.

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Natriuretic peptides A24Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P01160 (Homo sapiens)
Explore P01160 
Go to UniProtKB:  P01160
PHAROS:  P01160
GTEx:  ENSG00000175206 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01160
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.96 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.19

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Fondazione CARIPLOItalyGJC23044
Italian Ministry of HealthItaly20207XLJB2

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-27
    Type: Initial release
  • Version 1.1: 2025-11-12
    Changes: Data collection, Database references