9R3E | pdb_00009r3e

Human FAM118B(34-334) 2 protomers


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Filament formation and NAD processing by noncanonical human FAM118 sirtuins.

Baretic, D.Missoury, S.Patel, K.Martinez, M.Coste, F.Zhu, K.Smith, R.Kopasz, A.G.Lu, Y.Bigot, N.Chapuis, C.Riou, R.Dukic, N.Goffinont, S.Pressoir, V.Patacko, S.Timinszky, G.Delarue, M.Castaing, B.Ahel, D.Mikoc, A.Huet, S.Ahel, I.Suskiewicz, M.J.

(2025) Nat Struct Mol Biol 

  • DOI: https://doi.org/10.1038/s41594-025-01715-1
  • Primary Citation of Related Structures:  
    9R0P, 9R0S, 9R3E

  • PubMed Abstract: 

    Sirtuins are an ancient family of enzymes with diverse nicotinamide adenine dinucleotide (NAD)-dependent activities. Here we identify family with sequence similarity 118 member B (FAM118B) and FAM118A-two understudied vertebrate proteins-as vertebrate-specific sirtuins with similarities to bacterial antiphage sirtuins. We show that human FAM118B forms head-to-tail filaments both in vitro and in living human cells, a feature that appears to be conserved in both FAM118B and its paralog FAM118A across vertebrates. While human FAM118B and FAM118A have individually very weak NAD-processing activity in vitro, their interaction leads to markedly increased activity, suggesting a tightly regulated system. The overexpression of wild-type human FAM118B and FAM118A leads to strongly decreased NAD levels in human cells, an effect that is abolished in catalytically dead or filament-deficient mutants. Our study highlights filament formation and NAD processing as conserved mechanisms among immunity-associated sirtuins across evolution.


  • Organizational Affiliation
    • Sir William Dunn School of Pathology, University of Oxford, Oxford, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FAM118BA [auth B],
B [auth C]
298Homo sapiensMutation(s): 0 
Gene Names: FAM118B
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BPY3 (Homo sapiens)
Explore Q9BPY3 
Go to UniProtKB:  Q9BPY3
PHAROS:  Q9BPY3
GTEx:  ENSG00000197798 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BPY3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-26
    Type: Initial release
  • Version 1.1: 2025-12-03
    Changes: Data collection, Database references