9QEK | pdb_00009qek

Structure of Human ROS1 Kinase Domain Harboring the G2032R Solvent-front Mutation in Complex with Zidesamtinib (NVL-520)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 
    0.272 (Depositor), 0.279 (DCC) 
  • R-Value Work: 
    0.201 (Depositor), 0.207 (DCC) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Zidesamtinib Selective Targeting of Diverse ROS1 Drug-Resistant Mutations.

Tangpeerachaikul, A.Mente, S.Magrino, J.Gu, F.Horan, J.C.Pelish, H.E.

(2025) Mol Cancer Ther 24: 1005-1019

  • DOI: https://doi.org/10.1158/1535-7163.MCT-25-0025
  • Primary Citation of Related Structures:  
    9QEK

  • PubMed Abstract: 

    Zidesamtinib (NVL-520) is a ROS1-selective macrocyclic tyrosine kinase inhibitor designed with the aim to address clinical challenges for patients with non-small cell lung or other cancers that are ROS1 fusion-positive. These challenges include emergent ROS1 resistance mutations and brain metastases that can lead to disease progression, and central nervous system adverse events attributed to off-target TRK inhibition that can be treatment limiting. We evaluated zidesamtinib in accelerated mutagenesis screens and a brain tumor model, comparing it to other approved or investigational ROS1 inhibitors. At clinically relevant concentrations, zidesamtinib robustly inhibited >1,500 pooled ROS1 mutants with virtually no resistance emerging (≤1%), outperforming comparators crizotinib, entrectinib, and repotrectinib. Zidesamtinib also induced more durable responses than repotrectinib and taletrectinib in an aggressive intracranial ROS1 G2032R xenograft model. A 2.2 Å co-crystal structure with ROS1 G2032R, the most frequently identified ROS1 resistance mutation, reveals that zidesamtinib uniquely accommodates the mutated residue while potentially clashing with TRK, consistent with its selective ROS1-targeting design and supported by computational modeling. Taken together, these data support zidesamtinib's potential as a novel best-in-class ROS1 inhibitor.


  • Organizational Affiliation
    • Nuvalent, Inc., Cambridge, United States.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proto-oncogene tyrosine-protein kinase ROS301Homo sapiensMutation(s): 1 
Gene Names: ROS1MCF3ROS
EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for P08922 (Homo sapiens)
Explore P08922 
Go to UniProtKB:  P08922
PHAROS:  P08922
GTEx:  ENSG00000047936 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08922
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free:  0.272 (Depositor), 0.279 (DCC) 
  • R-Value Work:  0.201 (Depositor), 0.207 (DCC) 
Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 106.02α = 90
b = 106.02β = 90
c = 50.51γ = 120
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
STARANISOdata scaling
PHASERphasing
REFMACrefinement

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-30
    Type: Initial release
  • Version 1.1: 2025-05-14
    Changes: Database references
  • Version 1.2: 2025-07-16
    Changes: Database references