9PV2 | pdb_00009pv2

Structure of S. aureus GpsB N-terminal domain

PDB DOI: https://doi.org/10.2210/pdb9PV2/pdb

Classification: CELL CYCLE
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-07-31 Released: 2025-10-01
Deposition Author(s): Nicely, N.I., Baker, R.W., Bartlett, T.M.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free:
0.236 (Depositor), 0.236 (DCC)
R-Value Work:
0.198 (Depositor), 0.198 (DCC)
R-Value Observed:
0.201 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of S. aureus GpsB N-terminal domain

Nicely, N.I., Baker, R.W., Bartlett, T.M.

To be published.

Macromolecule Content

Total Structure Weight: 17.74 kDa
Atom Count: 1,369
Modeled Residue Count: 146
Deposited Residue Count: 150
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell cycle protein GpsB	A, B	75	Staphylococcus aureus	Mutation(s): 0 Gene Names: gpsB, SAOUHSC_01462
UniProt
Find proteins for Q2FYI5 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FYI5 Go to UniProtKB: Q2FYI5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q2FYI5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.236 (Depositor), 0.236 (DCC)
R-Value Work: 0.198 (Depositor), 0.198 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.373	α = 90
b = 55.531	β = 90
c = 77.077	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-10-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-10-01
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.