Mechanism of conductance control and neurosteroid binding in NMDA receptors
Kang, H., Steigerwald, R., Ullman, E.Z., Epstein, M., Paladugu, S., Liotta, D.C., Traynelis, S.F., Furukawa, H.(2025) Nature 
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
(2025) Nature 
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutamate receptor ionotropic, NMDA 1 | 830 | Homo sapiens | Mutation(s): 4  Gene Names: GRIN1, NMDAR1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q05586 (Homo sapiens) Explore Q05586  Go to UniProtKB:  Q05586 | |||||
PHAROS:  Q05586 GTEx:  ENSG00000176884  | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q05586 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutamate receptor ionotropic, NMDA 2B | 861 | Homo sapiens | Mutation(s): 3  Gene Names: GRIN2B, NMDAR2B | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13224 (Homo sapiens) Explore Q13224  Go to UniProtKB:  Q13224 | |||||
PHAROS:  Q13224 GTEx:  ENSG00000273079  | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q13224 | ||||
Sequence AnnotationsExpand | |||||
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| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| POV Query on POV | F [auth A] G [auth A] H [auth A] K [auth B] L [auth B] | (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate C42 H82 N O8 P WTJKGGKOPKCXLL-PFDVCBLKSA-N | |||
| A1CE1 (Subject of Investigation/LOI) Query on A1CE1 | J [auth B], Q [auth D] | 24S-hydroxycholesterol C27 H46 O2 IOWMKBFJCNLRTC-XWXSNNQWSA-N | |||
| GLU (Subject of Investigation/LOI) Query on GLU | I [auth B], P [auth D] | GLUTAMIC ACID C5 H9 N O4 WHUUTDBJXJRKMK-VKHMYHEASA-N | |||
| GLY (Subject of Investigation/LOI) Query on GLY | E [auth A], M [auth C] | GLYCINE C2 H5 N O2 DHMQDGOQFOQNFH-UHFFFAOYSA-N | |||
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | cryoSPARC | |
| MODEL REFINEMENT | PHENIX |
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of Mental Health (NIH/NIMH) | United States | MH085926 |
| National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) | United States | NS111745 |