9OL5 | pdb_00009ol5

Rabbit Ryanodine Receptor 1: Atorvastatin Bound Closed Conformation

PDB DOI: https://doi.org/10.2210/pdb9OL5/pdb
EM Map EMD-70590: EMDB EMDataResource

Classification: TRANSPORT PROTEIN/Isomerase
Organism(s): Oryctolagus cuniculus, Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-05-12 Released: 2025-12-03
Deposition Author(s): Molinarolo, S.M., Van Petegem, F.
Funding Organization(s): Canadian Institutes of Health Research (CIHR)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM Structure of Ryanodine Receptor 1: Drug Bound Closed Conformation

Molinarolo, S.M., Van Petegem, F.

To be published.

Macromolecule Content

Total Structure Weight: 2,314.57 kDa
Atom Count: 134,812
Modeled Residue Count: 17,180
Deposited Residue Count: 20,592
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ryanodine receptor 1	A, C [auth G], E [auth M], G [auth S]	5,037	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for P11716 (Oryctolagus cuniculus) Explore P11716 Go to UniProtKB: P11716
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P11716
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-prolyl cis-trans isomerase FKBP1B	B, D [auth H], F [auth N], H [auth T]	111	Homo sapiens	Mutation(s): 0 Gene Names: FKBP1B, FKBP12.6, FKBP1L, FKBP9, OTK4 EC: 5.2.1.8
UniProt & NIH Common Fund Data Resources
Find proteins for P68106 (Homo sapiens) Explore P68106 Go to UniProtKB: P68106
PHAROS: P68106 GTEx: ENSG00000119782
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P68106
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
117 (Subject of Investigation/LOI) Query on 117 Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain M [auth G] SDF format, chain P [auth M] SDF format, chain S MOL2 format, chain J [auth A] MOL2 format, chain M [auth G] MOL2 format, chain P [auth M] MOL2 format, chain S mmCIF format, chain J [auth A] mmCIF format, chain M [auth G] mmCIF format, chain P [auth M] mmCIF format, chain S	J [auth A], M [auth G], P [auth M], S	7-[2-(4-FLUORO-PHENYL)-5-ISOPROPYL-3-PHENYL-4-PHENYLCARBAMOYL-PYRROL-1-YL]- 3,5-DIHYDROXY-HEPTANOIC ACID C₃₃ H₃₅ F N₂ O₅ XUKUURHRXDUEBC-KAYWLYCHSA-N		Interactions Focus chain J [auth A] Focus chain M [auth G] Focus chain P [auth M] Focus chain S Interactions & Density Focus chain J [auth A] Focus chain M [auth G] Focus chain P [auth M] Focus chain S
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain N [auth G] SDF format, chain Q [auth M] SDF format, chain T [auth S] MOL2 format, chain K [auth A] MOL2 format, chain N [auth G] MOL2 format, chain Q [auth M] MOL2 format, chain T [auth S] mmCIF format, chain K [auth A] mmCIF format, chain N [auth G] mmCIF format, chain Q [auth M] mmCIF format, chain T [auth S]	K [auth A], N [auth G], Q [auth M], T [auth S]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain K [auth A] Focus chain N [auth G] Focus chain Q [auth M] Focus chain T [auth S] Interactions & Density Focus chain K [auth A] Focus chain N [auth G] Focus chain Q [auth M] Focus chain T [auth S]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain L [auth G] SDF format, chain O [auth M] SDF format, chain R [auth S] MOL2 format, chain I [auth A] MOL2 format, chain L [auth G] MOL2 format, chain O [auth M] MOL2 format, chain R [auth S] mmCIF format, chain I [auth A] mmCIF format, chain L [auth G] mmCIF format, chain O [auth M] mmCIF format, chain R [auth S]	I [auth A], L [auth G], O [auth M], R [auth S]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain L [auth G] Focus chain O [auth M] Focus chain R [auth S] Interactions & Density Focus chain I [auth A] Focus chain L [auth G] Focus chain O [auth M] Focus chain R [auth S]