9NQD | pdb_00009nqd

Structure of Pseudomonas FapC Biofilm-Forming Functional Amyloid


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of Pseudomonas biofilm-forming functional amyloid FapC formation.

Hansen, K.H.Golcuk, M.Byeon, C.H.Tunc, A.Plechinger, E.B.Dueholm, M.K.D.Conway, J.F.Andreasen, M.Gur, M.Akbey, U.

(2025) Sci Adv 11: eadx7829-eadx7829

  • DOI: https://doi.org/10.1126/sciadv.adx7829
  • Primary Citation of Related Structures:  
    9NQD

  • PubMed Abstract: 

    Biofilm-protected Pseudomonas aeruginosa causes chronic infections that are difficult to treat. FapC, the major biofilm-forming functional amyloid in Pseudomonas , is essential for biofilm integrity, yet its structural details remain unresolved. Using an integrative structural biology approach, we combine a solution nuclear magnetic resonance-based structural ensemble of unfolded monomeric FapC, a ~3.3-angstrom-resolution cryo-electron microscopy (cryo-EM) density map of FapC fibril, and all-atom molecular dynamics (MD) simulations to capture the transition from the unfolded to folded monomer to the fibrillar fold, providing a complete structural view of FapC biogenesis. Cryo-EM reveals a unique irregular triple-layer β solenoid cross-β fibril composed of a single protofilament. MD simulations initiated from monomeric and fibrillar FapC mapped structural transitions, offering mechanistic insights into amyloid assembly and disassembly. Understanding FapC reveals how Pseudomonas exploits functional amyloids for biofilm formation, and establishes a structural and mechanistic foundation for developing therapeutics targeting biofilm-related infection and antimicrobial resistance.


  • Organizational Affiliation
    • Department of Structural Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15261, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Functional amyloid subunit FapC226Pseudomonas fluorescensMutation(s): 0 
Gene Names: fapCHZ99_04090PSUK4_00030
UniProt
Find proteins for P0DXF5 (Pseudomonas fluorescens)
Explore P0DXF5 
Go to UniProtKB:  P0DXF5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DXF5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.5
MODEL REFINEMENTUCSF ChimeraX1.8
MODEL REFINEMENTPHENIX1.20

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-25
    Type: Initial release
  • Version 1.1: 2025-10-08
    Changes: Data collection, Database references, Structure summary