9NO4 | pdb_00009no4

Deposited: 2025-03-07 Released: 2025-11-12
Deposition Author(s): Goswami, H.N., Li, H.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Goswami, H.N., Li, H.

To be published.

Macromolecule Content

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR system Cms protein Csm4	A [auth B]	299	Streptococcus thermophilus	Mutation(s): 0 Gene Names: csm, csm4, STCNRZ302_04685, STHERMO_1022, STHERMO_1028, STHERMO_1031
UniProt
Find proteins for A0A811IGE5 (Streptococcus thermophilus) Explore A0A811IGE5 Go to UniProtKB: A0A811IGE5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A811IGE5
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR system Cms endoribonuclease Csm3	B [auth E], C [auth F]	220	Streptococcus thermophilus	Mutation(s): 0 Gene Names: csm, STHERMO_1021
UniProt
Find proteins for A0AAN1ZZJ5 (Streptococcus thermophilus) Explore A0AAN1ZZJ5 Go to UniProtKB: A0AAN1ZZJ5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0AAN1ZZJ5
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR system Cms endoribonuclease Csm3	D [auth G]	220	Streptococcus thermophilus	Mutation(s): 0 Gene Names: csm, STHERMO_1021
UniProt
Find proteins for A0AAN1ZZJ5 (Streptococcus thermophilus) Explore A0AAN1ZZJ5 Go to UniProtKB: A0AAN1ZZJ5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0AAN1ZZJ5
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR system Cms protein Csm2	F [auth C], G [auth D]	130	Streptococcus thermophilus	Mutation(s): 0 Gene Names: csm, STHERMO_1026
UniProt
Find proteins for A0A8D6U6W4 (Streptococcus thermophilus) Explore A0A8D6U6W4 Go to UniProtKB: A0A8D6U6W4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8D6U6W4
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR system Cms protein Csm5	H	357	Streptococcus thermophilus	Mutation(s): 0 Gene Names: csm5
UniProt
Find proteins for A0A0A7HF79 (Streptococcus thermophilus) Explore A0A0A7HF79 Go to UniProtKB: A0A0A7HF79
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0A7HF79
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Reference Sequence

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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Enolase	I J L [auth K] M [auth L] N [auth M] I, J, L [auth K], M [auth L], N [auth M], O, P, Q	434	Streptococcus thermophilus	Mutation(s): 0 Gene Names: eno, STER_0684 EC: 4.2.1.11
UniProt
Find proteins for Q03LI0 (Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9)) Explore Q03LI0 Go to UniProtKB: Q03LI0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q03LI0
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Reference Sequence

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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
AcrIIIA2	K [auth R]	105	Streptococcus phage 2972	Mutation(s): 0 Gene Names: CHPC1156_0026
UniProt
Find proteins for A0A3G8FB66 (Streptococcus phage CHPC1156) Explore A0A3G8FB66 Go to UniProtKB: A0A3G8FB66
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A3G8FB66
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Reference Sequence

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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A)	R [auth A]	758	Streptococcus thermophilus	Mutation(s): 0 Gene Names: cas10, csm1 EC: 3.1 (PDB Primary Data), 2.7.7 (PDB Primary Data)
UniProt
Find proteins for A0A0A7HFE1 (Streptococcus thermophilus) Explore A0A0A7HFE1 Go to UniProtKB: A0A0A7HFE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0A7HFE1
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Length	Organism	Image
crRNA RNA (35-MER)	E [auth N]	35	Streptococcus thermophilus
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain S [auth I] SDF format, chain T [auth J] SDF format, chain U [auth K] SDF format, chain V [auth L] SDF format, chain W [auth M] SDF format, chain X [auth O] SDF format, chain Y [auth P] SDF format, chain Z [auth Q] MOL2 format, chain S [auth I] MOL2 format, chain T [auth J] MOL2 format, chain U [auth K] MOL2 format, chain V [auth L] MOL2 format, chain W [auth M] MOL2 format, chain X [auth O] MOL2 format, chain Y [auth P] MOL2 format, chain Z [auth Q] mmCIF format, chain S [auth I] mmCIF format, chain T [auth J] mmCIF format, chain U [auth K] mmCIF format, chain V [auth L] mmCIF format, chain W [auth M] mmCIF format, chain X [auth O] mmCIF format, chain Y [auth P] mmCIF format, chain Z [auth Q]	S [auth I] T [auth J] U [auth K] V [auth L] W [auth M] S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth O], Y [auth P], Z [auth Q]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain S [auth I] Focus chain T [auth J] Focus chain U [auth K] Focus chain V [auth L] Focus chain W [auth M] Focus chain X [auth O] Focus chain Y [auth P] Focus chain Z [auth Q] Interactions & Density Focus chain S [auth I] Focus chain T [auth J] Focus chain U [auth K] Focus chain V [auth L] Focus chain W [auth M] Focus chain X [auth O] Focus chain Y [auth P] Focus chain Z [auth Q]