9N7Y | pdb_00009n7y

BioSAS-TEVp (C151A, core) bound to TEV protease cleavage peptide

PDB DOI: https://doi.org/10.2210/pdb9N7Y/pdb

Classification: HYDROLASE
Organism(s): Tobacco etch virus, synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-02-07 Released: 2025-07-02
Deposition Author(s): Kaczmarski, J.A., Frkic, R.L., Jackson, C.J.
Funding Organization(s): Australian Research Council (ARC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.08 Å
R-Value Free:
0.248 (Depositor), 0.246 (DCC)
R-Value Work:
0.203 (Depositor), 0.202 (DCC)
R-Value Observed:
0.205 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

BioSAS-TEVp (C151A, core) bound to TEV protease cleavage peptide

Kaczmarski, J.A., Frkic, R.L., Jackson, C.J.

To be published.

Macromolecule Content

Total Structure Weight: 101.57 kDa
Atom Count: 7,038
Modeled Residue Count: 886
Deposited Residue Count: 904
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TEV protease-like hydrolase	A, B, C, D	217	Tobacco etch virus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Cleavage peptide	E, F, G, H	9	synthetic construct	Mutation(s): 0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain I [auth B] MOL2 format, chain I [auth B] mmCIF format, chain I [auth B]	I [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain I [auth B] Interactions & Density Focus chain I [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.08 Å
R-Value Free: 0.248 (Depositor), 0.246 (DCC)
R-Value Work: 0.203 (Depositor), 0.202 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 157.446	α = 90
b = 157.446	β = 90
c = 87.846	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-07-02

Deposition Author(s):

Kaczmarski, J.A.

Funding Organization	Location	Grant Number
Australian Research Council (ARC)	Australia	CE200100012
Australian Research Council (ARC)	Australia	CE200100029

Revision History (Full details and data files)

Version 1.0: 2025-07-02
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.