9N4E | pdb_00009n4e

Structure of AG2-G02 Fab in complex with influenza H3N8 A/Mallard/Alberta/362/2017 Hemagglutinin

• PDB DOI: https://doi.org/10.2210/pdb9N4E/pdb
• EM Map EMD-48873: EMDB EMDataResource

• Classification: VIRAL PROTEIN/IMMUNE SYSTEM
• Organism(s): Influenza A virus, Homo sapiens
• Expression System: Spodoptera frugiperda, Homo sapiens
• Mutation(s): No 


• Deposited: 2025-02-02 Released: 2025-10-08 
• Deposition Author(s): Gopal, A.B., Wu, N.C., Lv, H., Pholcharee, T.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.60 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of AG2-G02 Fab in complex with influenza H3N8 A/Mallard/Alberta/362/2017 Hemagglutinin

Gopal, A.B., Wu, N.C., Lv, H., Pholcharee, T.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Hetero 12-mer - A3B3C3D3 Pseudo Symmetry: Cyclic - C3  (Explore in 3D)
Pseudo Stoichiometry: Hetero 12-mer - A6B3C3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 409.61 kDa 
• Atom Count: 16,662 
• Modeled Residue Count: 2,124 
• Deposited Residue Count: 3,675 
• Unique protein chains: 4

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	A, B [auth C], C [auth E]	495	Influenza A virus	Mutation(s): 0  Gene Names: HA
UniProt
Find proteins for A0A2Z4WHK0 (Influenza A virus) Explore A0A2Z4WHK0  Go to UniProtKB:  A0A2Z4WHK0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Variable domain of the heavy chain of Fab AG2-G02	D [auth K], F [auth O], H [auth Q]	125	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Variable domain of the light chain of Fab AG2-G02	E [auth M], G [auth P], I [auth R]	110	Homo sapiens	Mutation(s): 0

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	J [auth B], K [auth D], L [auth F]	495	Influenza A virus	Mutation(s): 0  Gene Names: HA
UniProt
Find proteins for A0A2Z4WF96 (Influenza A virus) Explore A0A2Z4WF96  Go to UniProtKB:  A0A2Z4WF96

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.60 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.5

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-10-08 
Deposition Author(s): Gopal, A.B., Wu, N.C., Lv, H., Pholcharee, T.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01 AI167910

Revision History  

• Version 1.0: 2025-10-08
  Type: Initial release