9MX0 | pdb_00009mx0

Cluster of bipartite complex of MmpL5-AcpM from Mycolicibacterium smegmatis

PDB DOI: https://doi.org/10.2210/pdb9MX0/pdb
EM Map EMD-48706: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Mycolicibacterium smegmatis
Expression System: Mycolicibacterium smegmatis
Mutation(s): No

Deposited: 2025-01-17 Released: 2025-07-30
Deposition Author(s): Zhang, Z., Maharjan, R., Gregor, W.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cluster of bipartite complex of MmpL5-AcpM from Mycolicibacterium smegmatis

Zhang, Z., Maharjan, R., Gregor, W.

To be published.

Macromolecule Content

Total Structure Weight: 1,398.97 kDa
Atom Count: 73,454
Modeled Residue Count: 9,684
Deposited Residue Count: 12,792
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Meromycolate extension acyl carrier protein	A [auth B] C E G I A [auth B], C, E, G, I, K, M, N, O, S, T, U	99	Mycolicibacterium smegmatis	Mutation(s): 0 Gene Names: acpM, MSMEG_4326, MSMEI_4226
UniProt
Find proteins for A0A1Y0C2R4 (Mycobacterium dioxanotrophicus) Explore A0A1Y0C2R4 Go to UniProtKB: A0A1Y0C2R4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1Y0C2R4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
MmpL5 protein	B [auth A] D F H J B [auth A], D, F, H, J, L, P, Q, R, V, W, X	967	Mycolicibacterium smegmatis	Mutation(s): 0 Gene Names: MSMEG_1382
UniProt
Find proteins for A0A1Y0CC73 (Mycobacterium dioxanotrophicus) Explore A0A1Y0CC73 Go to UniProtKB: A0A1Y0CC73
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1Y0CC73
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PNS Query on PNS Download Ideal Coordinates CCD File SDF format, chain AA [auth E] SDF format, chain BA [auth G] SDF format, chain CA [auth K] SDF format, chain DA [auth N] SDF format, chain EA [auth S] SDF format, chain FA [auth T] SDF format, chain Y [auth B] SDF format, chain Z [auth C] MOL2 format, chain AA [auth E] MOL2 format, chain BA [auth G] MOL2 format, chain CA [auth K] MOL2 format, chain DA [auth N] MOL2 format, chain EA [auth S] MOL2 format, chain FA [auth T] MOL2 format, chain Y [auth B] MOL2 format, chain Z [auth C] mmCIF format, chain AA [auth E] mmCIF format, chain BA [auth G] mmCIF format, chain CA [auth K] mmCIF format, chain DA [auth N] mmCIF format, chain EA [auth S] mmCIF format, chain FA [auth T] mmCIF format, chain Y [auth B] mmCIF format, chain Z [auth C]	AA [auth E] BA [auth G] CA [auth K] DA [auth N] EA [auth S] AA [auth E], BA [auth G], CA [auth K], DA [auth N], EA [auth S], FA [auth T], Y [auth B], Z [auth C]	4'-PHOSPHOPANTETHEINE C₁₁ H₂₃ N₂ O₇ P S JDMUPRLRUUMCTL-VIFPVBQESA-N		Interactions Focus chain AA [auth E] Focus chain BA [auth G] Focus chain CA [auth K] Focus chain DA [auth N] Focus chain EA [auth S] Focus chain FA [auth T] Focus chain Y [auth B] Focus chain Z [auth C] Interactions & Density Focus chain AA [auth E] Focus chain BA [auth G] Focus chain CA [auth K] Focus chain DA [auth N] Focus chain EA [auth S] Focus chain FA [auth T] Focus chain Y [auth B] Focus chain Z [auth C]