9MIT

Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (Hepes bound)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 
    0.168 (Depositor), 0.175 (DCC) 
  • R-Value Work: 
    0.147 (Depositor), 0.157 (DCC) 
  • R-Value Observed: 
    0.148 (Depositor) 

Starting Model: in silico
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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (Hepes bound)

Liu, L.Lovell, S.Battaile, K.P.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Purine nucleoside phosphorylase, putative
A, B, C, D, E
A, B, C, D, E, F
244Trichomonas vaginalis G3Mutation(s): 0 
Gene Names: TVAG_454490
UniProt
Find proteins for A2EU62 (Trichomonas vaginalis (strain ATCC PRA-98 / G3))
Explore A2EU62 
Go to UniProtKB:  A2EU62
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA2EU62
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
EPE (Subject of Investigation/LOI)
Query on EPE

Download Ideal Coordinates CCD File 
H [auth B],
K [auth D]
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
GOL
Query on GOL

Download Ideal Coordinates CCD File 
G [auth A]
I [auth B]
J [auth C]
L [auth D]
M [auth E]
G [auth A],
I [auth B],
J [auth C],
L [auth D],
M [auth E],
N [auth F]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free:  0.168 (Depositor), 0.175 (DCC) 
  • R-Value Work:  0.147 (Depositor), 0.157 (DCC) 
  • R-Value Observed: 0.148 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 169.816α = 90
b = 49.713β = 99.18
c = 175.122γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States75N93022C00036
National Institutes of Health/Office of the DirectorUnited StatesS10OD030394

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-25
    Type: Initial release