9MIQ | pdb_00009miq

Wild-type Coproheme Decarboxylase from Streptomyces Coelicolor in complex with Monovinyl, Monopropionate Deuteroheme

PDB DOI: https://doi.org/10.2210/pdb9MIQ/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Streptomyces coelicolor
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-12-13 Released: 2025-10-22
Deposition Author(s): Carriuolo, A.J., Lanzilotta, W.N.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.254 (Depositor), 0.254 (DCC)
R-Value Work:
0.209 (Depositor), 0.208 (DCC)
R-Value Observed:
0.209 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Wild-type Coproheme Decarboxylase from Streptomyces Coelicolor in complex with Monovinyl, Monopropionate Deuteroheme

Carriuolo, A.J., Lanzilotta, W.N.

To be published.

Macromolecule Content

Total Structure Weight: 288.35 kDa
Atom Count: 18,777
Modeled Residue Count: 2,211
Deposited Residue Count: 2,430
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Coproheme decarboxylase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	243	Streptomyces coelicolor	Mutation(s): 0 Gene Names: chdC, SCO6042 EC: 1.3.98.5
UniProt
Find proteins for O69830 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore O69830 Go to UniProtKB: O69830
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O69830
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
VOV Query on VOV Download:Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain M [auth C] SDF format, chain N [auth D] SDF format, chain O [auth E] SDF format, chain P [auth F] SDF format, chain Q [auth G] SDF format, chain R [auth H] SDF format, chain S [auth I] SDF format, chain T [auth J] SDF format, chain L [auth B] MOL2 format, chain K [auth A] MOL2 format, chain M [auth C] MOL2 format, chain N [auth D] MOL2 format, chain O [auth E] MOL2 format, chain P [auth F] MOL2 format, chain Q [auth G] MOL2 format, chain R [auth H] MOL2 format, chain S [auth I] MOL2 format, chain T [auth J] MOL2 format, chain L [auth B] mmCIF format, chain K [auth A] mmCIF format, chain M [auth C] mmCIF format, chain N [auth D] mmCIF format, chain O [auth E] mmCIF format, chain P [auth F] mmCIF format, chain Q [auth G] mmCIF format, chain R [auth H] mmCIF format, chain S [auth I] mmCIF format, chain T [auth J] mmCIF format, chain L [auth B]	K [auth A] L [auth B] M [auth C] N [auth D] O [auth E] K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J]	harderoheme (III) C₃₅ H₃₄ Fe N₄ O₆ WHUQBNXBFVNCIJ-RGGAHWMASA-L		Interactions Focus chain K [auth A] Focus chain L [auth B] Focus chain M [auth C] Focus chain N [auth D] Focus chain O [auth E] Focus chain P [auth F] Focus chain Q [auth G] Focus chain R [auth H] Focus chain S [auth I] Focus chain T [auth J] Interactions & Density Focus chain K [auth A] Focus chain L [auth B] Focus chain M [auth C] Focus chain N [auth D] Focus chain O [auth E] Focus chain P [auth F] Focus chain Q [auth G] Focus chain R [auth H] Focus chain S [auth I] Focus chain T [auth J]