9M0S | pdb_00009m0s

Acetyl-CoA-bound SLC33A1 in a cytoplasm-facing conformation

PDB DOI: https://doi.org/10.2210/pdb9M0S/pdb
EM Map EMD-63562: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes MemProtMD

Deposited: 2025-02-25 Released: 2025-04-23
Deposition Author(s): Zhou, D., Zhang, Z.
Funding Organization(s): Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9M0S

This is version 1.0 of the entry. See complete history.

Literature

Mechanistic insights into the acetyl-CoA recognition by SLC33A1.

Zhou, D., Chen, N., Huang, S., Song, C., Zhang, Z.

(2025) Cell Discov 11: 36-36

PubMed: 40204708 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1038/s41421-025-00793-1
Primary Citation Related Structures:
9M0S

Organizational Affiliation

State Key Laboratory of Membrane Biology, School of Life Sciences, Peking University, Beijing, China.

Macromolecule Content

Total Structure Weight: 62.94 kDa
Atom Count: 3,413
Modeled Residue Count: 424
Deposited Residue Count: 560
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-coenzyme A transporter 1	A	560	Homo sapiens	Mutation(s): 0 Gene Names: SLC33A1, ACATN, AT1 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for O00400 (Homo sapiens) Explore O00400 Go to UniProtKB: O00400
PHAROS: O00400 GTEx: ENSG00000169359
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O00400
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACO (Subject of Investigation/LOI) Query on ACO Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	*ACETYL COENZYME A** C₂₃ H₃₈ N₇ O₁₇ P₃ S ZSLZBFCDCINBPY-ZSJPKINUSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21_5207:

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-04-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	32471252

Revision History (Full details and data files)

Version 1.0: 2025-04-23
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.