9LO2 | pdb_00009lo2

Crystal Structure of Anti-CRISPR protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 
    0.241 (Depositor), 0.239 (DCC) 
  • R-Value Work: 
    0.208 (Depositor) 
  • R-Value Observed: 
    0.211 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 9LO2

This is version 1.1 of the entry. See complete history

Literature

Structural Investigation of the Anti-CRISPR Protein AcrIE7.

Kang, J.Park, C.Lee, G.Koo, J.Oh, H.Kim, E.H.Bae, E.Suh, J.Y.

(2025) Proteins 93: 1645-1656

  • DOI: https://doi.org/10.1002/prot.26832
  • Primary Citation Related Structures: 
    9LO1, 9LO2

  • PubMed Abstract: 

    The CRISPR-Cas system is an adaptive immune system in prokaryotes that provides protection against bacteriophages. As a countermeasure, bacteriophages have evolved various anti-CRISPR proteins that neutralize CRISPR-Cas immunity. Here, we report the structural and functional investigation of AcrIE7, which inhibits the type I-E CRISPR-Cas system in Pseudomonas aeruginosa. We determined both crystal and solution structures of AcrIE7, which revealed a novel helical fold. In binding assays using various biochemical methods, AcrIE7 did not tightly interact with a single Cas component in the type I-E Cascade complex or the CRISPR adaptation machinery. In contrast, AlphaFold modeling with our experimentally determined AcrIE7 structure predicted that AcrIE7 interacts with Cas3 in the type I-E CRISPR-Cas system in P. aeruginosa. Our findings are consistent with a model where AcrIE7 inhibits Cas3 and also highlight the effectiveness and limitations of AlphaFold modeling.


  • Organizational Affiliation
    • Department of Agricultural Biotechnology, Seoul National University, Seoul, Korea.

Macromolecule Content 

  • Total Structure Weight: 36.04 kDa 
  • Atom Count: 2,725 
  • Modeled Residue Count: 315 
  • Deposited Residue Count: 321 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Anti-CRISPR protein, AcrIE7
A, B, C
107Pseudomonas aeruginosaMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free:  0.241 (Depositor), 0.239 (DCC) 
  • R-Value Work:  0.208 (Depositor) 
  • R-Value Observed: 0.211 (Depositor) 
Space Group: P 63 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 109.203α = 90
b = 109.203β = 90
c = 187.956γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
HKL-2000data scaling
PHENIXphasing
PHENIXmodel building
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic OfNRF-2022R1A2C1009804
National Research Foundation (NRF, Korea)Korea, Republic OfRS-2023-00207820

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-18
    Type: Initial release
  • Version 1.1: 2025-08-13
    Changes: Database references