9LIB | pdb_00009lib

Solution NMR structure of the bound antimicrobial peptide VR18 to Pseudomonas aeruginosa LPS bicelle at pH 4

  • Classification: ANTIMICROBIAL PROTEIN
  • Organism(s): Dengue virus
  • Mutation(s): No 

  • Deposited: 2025-01-14 Released: 2025-09-17 
  • Deposition Author(s): Biswas, K., Bhunia, A.
  • Funding Organization(s): Science and Engineering Research Board (SERB), India-Swedish (DST-VR) Programme of Cooperation in Science & Technology

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Transgenic Tobacco Plants Expressing Synthetic Peptides: A Functional and Structural Analysis for Pathogen Resistance.

Biswas, K.Mitra, S.Roy, D.Roy, S.Sarkar, D.Son, D.Das, R.Roy, A.Senapati, D.Ilyas, H.Harikishore, A.Biswas, R.Chakrabarty, S.Lee, D.Biswas, I.Saha, S.Kundu, P.Bhunia, A.

(2026) Plant Biotechnol J 24: 526-546

  • DOI: https://doi.org/10.1111/pbi.70287
  • Primary Citation Related Structures: 
    9LIB, 9LJD

  • PubMed Abstract: 

    The emergence of multidrug-resistant pathogens poses a serious threat to human health and agriculture. Current antimicrobial strategies against phytopathogens are often ineffective, failing to ensure food security while contributing to environmental pollution. Synthetic antimicrobial peptides (AMPs) offer a promising alternative due to their broad-spectrum activity and potential for recombinant production. In this study, we investigated the antibacterial potential of two synthetic peptides, VR18 and KG18, against animal as well as plant phytopathogens. Both peptides showed selective binding to bacterial membranes, while exhibiting no toxicity or allergenicity in animal cells. Using solution-state NMR, we explored how their structure relates to their function in disrupting bacterial membranes. When expressed transgenically in Nicotiana tabacum, VR18 and KG18 conferred resistance to Pseudomonas syringae pv. tabaci-a significant plant pathogen-without interfering with the plant's normal stress responses or metabolic activity. These results underscore the potential of AMPs as a sustainable, in vivo alternative to traditional antimicrobials in agriculture and open the door to broader applications in managing phytopathogenic threats.


  • Organizational Affiliation
    • Department of Chemical Sciences, Unified Academic Campus, Bose Institute, Kolkata, India.

Macromolecule Content 

  • Total Structure Weight: 2.07 kDa 
  • Atom Count: 144 
  • Modeled Residue Count: 18 
  • Deposited Residue Count: 18 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
VR18 (VAL-ALA-ARG-GLY-TRP-GLY-ARG-LYS-CYS-PRO-LEU-PHE-GLY-LYS-ASN-LYS-SER-ARG)18Dengue virusMutation(s): 0 
Entity Groups
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Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Science and Engineering Research Board (SERB)IndiaEMR/2017/003457
India-Swedish (DST-VR) Programme of Cooperation in Science & TechnologyIndia2015-06720

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-17
    Type: Initial release
  • Version 1.1: 2025-10-08
    Changes: Database references
  • Version 1.2: 2026-03-04
    Changes: Database references