9LGH | pdb_00009lgh

Cryo-EM structure of CotVW filament, bacillus subtilis endospore protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

Starting Model: in silico
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This is version 1.1 of the entry. See complete history


Literature

Filamentous structure of the CotVW complex, the crust proteins of the Bacillus subtilis endospore.

Jo, E.Kim, D.Baek, Y.Park, M.Lee, H.Ha, N.C.

(2025) J Biological Chem 301: 110714-110714

  • DOI: https://doi.org/10.1016/j.jbc.2025.110714
  • Primary Citation of Related Structures:  
    9LGH

  • PubMed Abstract: 

    The endospores of Bacillus subtilis are encased in a multilayered protective structure comprising core, cortex, inner and outer coats, and an outermost crust. Among the proteins required for crust formation, CotV and CotW are unique to B. subtilis and are hypothesized to be instrumental in maintaining spore surface integrity. However, their structural organization and functional mechanisms remain unclear. This study determined the cryogenic electron microscopy (cryo-EM) structure of the CotVW complex and revealed its filamentous helical architecture. Structural analysis showed that CotVW possesses a negatively charged surface that enables pH-dependent binding interactions. Specifically, at pH 6.0, CotVW engages in electrostatic interactions with histidine and positively charged residues, suggesting a potential regulatory mechanism influenced by the environmental pH. Our results elucidate the molecular basis of CotVW function in B. subtilis spore crust formation, highlighting its role in spore surface organization. This study advances our understanding of the spore coat architecture and may inform future research on bacterial spore resilience and structural adaptation.


  • Organizational Affiliation
    • Research Institute of Agriculture and Life Sciences, Department of Agricultural Biotechnology, CALS, Seoul National University, Seoul 08826, Republic of Korea.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Spore coat protein VA [auth V]143Bacillus subtilis subsp. subtilis str. 168Mutation(s): 0 
Gene Names: cotVBSU11780
UniProt
Find proteins for Q08309 (Bacillus subtilis (strain 168))
Explore Q08309 
Go to UniProtKB:  Q08309
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08309
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Spore coat protein WB [auth W]106Bacillus subtilis subsp. subtilis str. 168Mutation(s): 0 
Gene Names: cotWBSU11770
UniProt
Find proteins for Q08310 (Bacillus subtilis (strain 168))
Explore Q08310 
Go to UniProtKB:  Q08310
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08310
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21
RECONSTRUCTIONcryoSPARC4.6.0

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not fundedKorea, Republic Of--

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-24
    Type: Initial release
  • Version 1.1: 2025-11-19
    Changes: Data collection, Database references