9LDQ | pdb_00009ldq

Crystal Structure of a triple-mutant(F12Y/P84T/F86W) of halohydrin dehalogenase HheC

PDB DOI: https://doi.org/10.2210/pdb9LDQ/pdb

Classification: LYASE
Organism(s): Agrobacterium tumefaciens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2025-01-06 Released: 2025-02-12
Deposition Author(s): Wan, N.W., Hu, D., Lu, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.24 Å
R-Value Free:
0.281 (Depositor), 0.279 (DCC)
R-Value Work:
0.224 (Depositor), 0.226 (DCC)
R-Value Observed:
0.227 (Depositor)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

Crystal Structure of a triple-mutant(F12Y/P84T/F86W) of halohydrin dehalogenase HheC

Wan, N.W.

To be published.

Macromolecule Content

Total Structure Weight: 115.75 kDa
Atom Count: 8,267
Modeled Residue Count: 1,012
Deposited Residue Count: 1,044
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Halohydrin dehalogenase	A, B, C, D	261	Agrobacterium tumefaciens	Mutation(s): 3 Gene Names: hheC
UniProt
Find proteins for Q93D82 (Agrobacterium tumefaciens) Explore Q93D82 Go to UniProtKB: Q93D82
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q93D82
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.24 Å
R-Value Free: 0.281 (Depositor), 0.279 (DCC)
R-Value Work: 0.224 (Depositor), 0.226 (DCC)
R-Value Observed: 0.227 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.54	α = 90
b = 97.75	β = 90
c = 146.58	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data scaling
HKL-3000	data reduction
AMPLE	phasing
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-02-12

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	22167023

Revision History (Full details and data files)

Version 1.0: 2025-02-12
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.