9L9U | pdb_00009l9u

Arabidopsis GORK WT1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure reveals a regulation mechanism of plant outward-rectifying K + channel GORK by structural rearrangements in the CNBD-Ankyrin bridge.

Yamanashi, T.Muraoka, Y.Furuta, T.Kume, T.Sekido, N.Saito, S.Terashima, S.Yokoyama, T.Tanaka, Y.Miyamoto, A.Sato, K.Ito, T.Nakazawa, H.Umetsu, M.Tanudjaja, E.Tsujii, M.Dreyer, I.Schroeder, J.I.Ishimaru, Y.Uozumi, N.

(2025) Proc Natl Acad Sci U S A 122: e2500070122-e2500070122

  • DOI: https://doi.org/10.1073/pnas.2500070122
  • Primary Citation of Related Structures:  
    9L9U, 9LA0, 9LA1, 9LA2, 9LA3, 9LA7

  • PubMed Abstract: 

    Guard cells, which regulate stomatal apertures in plants, possess a sophisticated mechanism for regulating turgor pressure. The outward-rectifying "K + out " channel GORK, expressed in guard cells of the plant Arabidopsis thaliana , is a central component that promotes stomatal closure by releasing K + to the extracellular space, thereby lowering turgor pressure. To date, the structural basis underlying the regulation of the K + transport activity of GORK is unclear. Using cryo-EM, we determined the structures of the GORK outward-rectifying K + channel with a resolution of 3.16 to 3.27 Å in five distinct conformations that differ significantly in their C-terminal cyclic nucleotide binding domain (CNBD) and ankyrin repeat (ANK) domain. The C-linker connects the transmembrane domains to the C-terminal domains, i.e., CNBD, CNBD-Ankyrin bridge, and ANK. The structural changes and interactions in the C-linker determine whether the closed state of GORK is closer to the preopen state or in a more removed state from the open state of the channel. In particular, interconversion in the short sequence within the CNBD-Ankyrin bridge plays a decisive role in this determination. This region forms an α-helix in the preopened state, while it adopts a nonhelical structure in further distant closed states. The dynamics of the cytosolic region strongly suggest that the K + channel activity of GORK is regulated by cytosolic signaling factors during stomatal closure.


  • Organizational Affiliation
    • Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai 980-8579, Japan.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium channel GORK
A, B, C, D
834Arabidopsis thalianaMutation(s): 0 
Gene Names: GORKAt5g37500MPA22.4
Membrane Entity: Yes 
UniProt
Find proteins for Q94A76 (Arabidopsis thaliana)
Explore Q94A76 
Go to UniProtKB:  Q94A76
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ94A76
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21_5207

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan--
Japan Agency for Medical Research and Development (AMED)Japan--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-16
    Type: Initial release
  • Version 1.1: 2025-08-06
    Changes: Data collection, Database references