9L5W | pdb_00009l5w

FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis

PDB DOI: https://doi.org/10.2210/pdb9L5W/pdb
EM Map EMD-62847: EMDB EMDataResource

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-12-23 Released: 2025-12-31
Deposition Author(s): Tan, Y.B., Luo, D.
Funding Organization(s): National Research Foundation (NRF, Singapore)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.60 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis

Tan, Y.B., Luo, D.

To be published.

Macromolecule Content

Total Structure Weight: 181.88 kDa
Atom Count: 11,682
Modeled Residue Count: 1,458
Deposited Residue Count: 1,638
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FAS-associated death domain protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	91	Homo sapiens	Mutation(s): 0 Gene Names: FADD, MORT1, GIG3
UniProt & NIH Common Fund Data Resources
Find proteins for Q13158 (Homo sapiens) Explore Q13158 Go to UniProtKB: Q13158
PHAROS: Q13158 GTEx: ENSG00000168040
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q13158
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.60 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC
MODEL REFINEMENT	PHENIX	1.20.1_4487:
MODEL REFINEMENT	Coot

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-12-31

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Singapore)	Singapore	NRF-CRP26-2021-0001

Revision History (Full details and data files)

Version 1.0: 2025-12-31
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.