9L2E

Structure of SARM1 bound to M1 in the intermediate state 2

PDB DOI: https://doi.org/10.2210/pdb9L2E/pdb
EM Map EMD-62773: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-12-17 Released: 2025-03-12
Deposition Author(s): Huang, Y., Zhang, J., Zheng, S., Wang, X.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Stepwise Activation of SARM1 For Cell Death and Axon Degeneration Revealed by a Biosynthetic NMN Mimic

Huang, Y., Zhang, J., Zheng, S., Wang, X.

To be published.

Macromolecule Content

Total Structure Weight: 643.87 kDa
Atom Count: 9,064
Modelled Residue Count: 1,112
Deposited Residue Count: 5,856
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NAD(+) hydrolase SARM1	A, B, C, D, E A, B, C, D, E, F, G, H	732	Homo sapiens	Mutation(s): 0 Gene Names: SARM1, KIAA0524, SAMD2, SARM EC: 3.2.2.6 (PDB Primary Data), 3.2.2 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q6SZW1 (Homo sapiens) Explore Q6SZW1 Go to UniProtKB: Q6SZW1
PHAROS: Q6SZW1 GTEx: ENSG00000004139
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6SZW1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19_4092

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-03-12

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History (Full details and data files)

Version 1.0: 2025-03-12
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.