9KL9 | pdb_00009kl9

crystal structure of a mutant Poly(Ethylene terephthalate) hydrolase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 
    0.235 (Depositor), 0.236 (DCC) 
  • R-Value Work: 
    0.195 (Depositor), 0.194 (DCC) 
  • R-Value Observed: 
    0.197 (Depositor) 

Starting Model: experimental
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Literature

Computational loop reconstruction based design of efficient PET hydrolases.

Wang, H.Cun, Y.Wang, M.Du, X.Yang, Z.Wang, H.Zhang, J.Wang, P.Feng, Y.Zhu, Y.

(2025) Commun Biol 8: 934-934

  • DOI: https://doi.org/10.1038/s42003-025-08364-6
  • Primary Citation of Related Structures:  
    9KL9

  • PubMed Abstract: 

    Enzymatic PET depolymerization represents a promising approach for establishing a circular economy for PET plastics. Nonetheless, limitations in enzyme activity persist as significant challenges to its industrial application. In this research, the backbone structure of the β6-β7 loop for PET hydrolase Bhr-PETase derived from the thermophilic bacterium HR29 was reconstructed by introducing double mutations (H218N/F222M), resulting in variant Bhr-NMT with high thermal stability (T m  = 92.9 °C) and 87% increase in activity. Moreover, the loop reconstruction mutations are transplanted into the engineered PET hydrolases LCC-ICCG and Kubu-P M12 , resulting variants LCC-ICCG-NM (T m  = 92.4 °C) and Kubu-P M12 -NM (T m  = 92.9 °C). Under high substrate concentration (165 g kg -1 ) and an enzyme loading of 0.5 mg enzyme g PET -1 , the designed variants Bhr-NMT, LCC-ICCG-NM, and Kubu-P M12 -NM achieve an overall conversion of 93%, 90%, and 94%, respectively, outperforming the benchmark LCC-ICCG (85%). Notably, under reduced enzyme loading (0.3 mg enzyme g PET -1 ), Kubu-P M12 -NM still reaches an overall conversion of 91%, which is significantly superior to benchmarks Kubu-P M12 (83%) and LCC-ICCG (71%). Overall, the engineered PET hydrolases demonstrate significant potential for industrial PET waste recycling.


  • Organizational Affiliation
    • College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Poly(Ethylene terephthalate) hydrolase
A, B
270bacterium HR29Mutation(s): 0 
Gene Names: HRbin29_00073
EC: 3.1.1.101
UniProt
Find proteins for A0ACD6B9U1 (bacterium HR29)
Explore A0ACD6B9U1 
Go to UniProtKB:  A0ACD6B9U1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0ACD6B9U1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free:  0.235 (Depositor), 0.236 (DCC) 
  • R-Value Work:  0.195 (Depositor), 0.194 (DCC) 
  • R-Value Observed: 0.197 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.713α = 103.233
b = 51.615β = 103.613
c = 56.679γ = 96.661
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
PHENIXphasing
Cootmodel building
PHENIXrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-01
    Type: Initial release