9KL0 | pdb_00009kl0

Structure of hSGLT2-MAP17 complex in the substrate-free inward-facing conformation in the presence of potassium


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.16 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mechanism of substrate recognition and release of human SGLT2.

Cui, W.Sun, Z.Xu, J.Liu, X.Kang, Y.Chen, L.

(2025) Nat Commun 16: 7140-7140

  • DOI: https://doi.org/10.1038/s41467-025-62421-6
  • Primary Citation of Related Structures:  
    9KKQ, 9KKW, 9KL0, 9KMN

  • PubMed Abstract: 

    Glucose is a vital energy source essential for life and human health. Sodium-glucose cotransporter 2 (SGLT2) is a sodium-glucose symporter that utilizes the electrochemical gradient of sodium to reabsorb glucose from kidney filtrate back into circulation. SGLT2 plays a crucial role in maintaining blood glucose homeostasis and is an important drug target for type 2 diabetes. Despite its significance, the mechanisms by which SGLT2 recognizes and releases substrates during its transport cycle remain largely unknown. Here, we present structures of human SGLT2 in complex with a glucose analogue in the occluded conformation at 2.6 Å resolution, revealing a detailed hydrogen bonding network at the substrate binding site that governs substrate recognition. Additionally, structures of SGLT2 in both the substrate-bound inward-facing conformation and the substrate-free inward-facing conformations illustrate the structural changes that occur during substrate release into cytosol. Our structural analysis, combined with mutagenesis results, identifies specific polar interactions that are essential for maintaining the outer and inner gates in their closed conformations.


  • Organizational Affiliation
    • State Key Laboratory of Membrane Biology, College of Future Technology, Institute of Molecular Medicine, Peking University, Beijing Key Laboratory of Cardiometabolic Molecular Medicine, Beijing, China.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sodium/glucose cotransporter 2672Homo sapiensMutation(s): 0 
Gene Names: SLC5A2SGLT2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P31639 (Homo sapiens)
Explore P31639 
Go to UniProtKB:  P31639
PHAROS:  P31639
GTEx:  ENSG00000140675 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP31639
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PDZK1-interacting protein 1114Homo sapiensMutation(s): 0 
Gene Names: PDZK1IP1MAP17
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q13113 (Homo sapiens)
Explore Q13113 
Go to UniProtKB:  Q13113
PHAROS:  Q13113
GTEx:  ENSG00000162366 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13113
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
mFab90-HC [auth H]117Mus musculusMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
mFab90-LD [auth L]106Mus musculusMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.16 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32430050
National Natural Science Foundation of China (NSFC)China32225027

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-03
    Type: Initial release