9KCV | pdb_00009kcv

Structure of the Medicago truncatula CNGC15b with CAM


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for the activity regulation of Medicago calcium channel CNGC15.

Xu, X.Wang, Q.Sun, T.Gao, H.Gu, R.Yang, J.Zhou, J.Fu, P.Wen, H.Yang, G.

(2025) Cell Discov 11: 63-63

  • DOI: https://doi.org/10.1038/s41421-025-00815-y
  • Primary Citation of Related Structures:  
    9KCU, 9KCV

  • PubMed Abstract: 

    Cyclic nucleotide-gated ion channels (CNGCs) in plants mediate Ca 2+ influx in response to environmental changes. Among numerous plant CNGCs, Medicago truncatula CNGC15a/b/c (MtCNGC15) is localized to the nuclear envelope. The opening and closing cycle of MtCNGC15 is tightly associated with the Ca 2+ oscillation in symbiosis. However, the molecular mechanism underlying MtCNGC15 activity regulation remains unclear. In this study, we present the structures of MtCNGC15 in its apo form and in the presence of CaM. The apo MtCNGC15b exhibits a flexible cytoplasmic domain (CPD), whereas binding of the MtCaM inhibits Ca 2+ currents and stabilizes the highly dynamic CPD. Furthermore, the activity of MtCNGC15b seems to be independent of cGMP. The hypothetical binding pocket for cGMP is occupied by an arginine residue. These findings elucidate the structural basis for the activity regulation of nuclear localized MtCNGC15.


  • Organizational Affiliation
    • Frontiers Science Center for Molecular Design Breeding, State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein CNGC15b,Calmodulin 2
A, B, C, D
798Medicago truncatulaMutation(s): 0 
Gene Names: CNGC15BMTR_4g05873011431828MTR_5g088320MtrunA17_Chr5g0440931
Membrane Entity: Yes 
UniProt
Find proteins for G7JND3 (Medicago truncatula)
Explore G7JND3 
Go to UniProtKB:  G7JND3
Find proteins for Q71JC5 (Medicago truncatula)
Explore Q71JC5 
Go to UniProtKB:  Q71JC5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsG7JND3Q71JC5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32422038
National Natural Science Foundation of China (NSFC)China32171188

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-13
    Type: Initial release